Noviherbaspirillum sp. UKPF54: FAY22_16580
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Entry
FAY22_16580 CDS
T06116
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FAY22_16580 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nok03021
]
FAY22_16580 (rpoD)
Transcription machinery [BR:
nok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAY22_16580 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QDZ29433
UniProt:
A0A5B8N9H1
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Position
3571754..3574246
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AA seq
830 aa
AA seq
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MIEAMTKPVKTLTLTAKTAKPEATPVEPGMARTIEHAADALQPPTKVTVVTKRSRLLSPA
KETAAPELPATGNVTAGGEPAAPDAAKPKVVVVRKAVPRTVAKPAAERIAPPAAPAASAA
PAATTPARTKAAPRQDKPAAEPATTAAEIDTSGYTLPAVKVPGRRGRRPSEYQPEHDELA
AVNAVERAEMTAASRARKTTSASMSAEDMEVRRKQIMALVKAGKERGFLTHAEIHDHLPD
DSTSQETLDSIIATLSDMGIAVYDQAPDAETLLLSDNVVAVSDDDAEAAVNTALSSVDAD
FGRTTDPVRMYMREMATVPLLTRQGEIEIAQRIEAGFTDMMQAVSACPAAIEEILAQVER
IRKDEIRIDDVVDGLVDPTTPDEAAVVASAADDEEDDEELDEDAADDEEDDSTSGSGAAS
LSEEQLAQLQKTALERFALIAAHFDKMRAVAEQEGTHSNAYREAQQTITADLLGMRFTAK
MVEKLCDMLRSQVEEVRRLERQILDIAVNKCGMPREHFIKVFPGNETNLAWVDAEADSDK
AYAVTLRRHIPAVKEYQKRLGDLQARVALPLAELRKINKQMTTGEMKARNAKREMVEANL
RLVISIAKKYVNRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRAIA
DQARTIRVPVHMIETINKMNRISRQILMETGSEPDAAMLAKKMDMPEKKVREILKIAKEP
VSMDTPMGDDGDSQLGDFIEDSSTLSPADAALHASMRNVIKDVLDSLPAREAKVLRMRYG
IDMASDATLEEVGKQFDVTRERIRQIESKAMNKLRHASRADRLRTFLESN
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaagcaatgaccaaacccgttaaaacgctgacactaaccgcaaagactgccaag
ccggaggcgacgccggtcgagcccggcatggcgcgtaccatcgaacacgccgccgatgcg
ctgcaacctccgaccaaggtgaccgtcgtcaccaagcgctcgcgcctgctgtcgcccgcc
aaggaaacggccgcgcccgagcttccggcgaccggcaacgtgacggccggtggcgaaccc
gctgcgcccgacgcggccaagccgaaagtcgtggtggtacgcaaagcggtgcccaggacc
gtggccaagccggcggccgagcgcattgcgccgccggccgcaccggcggcgtccgcagcg
cccgcggcaacgacaccggccaggaccaaggccgcgccgcgccaggacaagccggccgcc
gaaccggccacgacagcggccgagatcgacacttccggctacaccctgccggcggtgaaa
gtgccgggccggcgcggtcgccgcccgtccgaataccagccggaacacgacgagctggcc
gcggtcaacgcggtggagcgcgccgaaatgacggcggcttcgcgcgcgcgcaagaccacg
agcgccagcatgagcgcggaagacatggaagtgcggcgcaagcagatcatggcgctggtc
aaggccggcaaggagcgcggctttttgacccacgccgagatccacgaccacttgccggac
gactcgaccagccaggaaacgctcgacagcatcatcgccacgctgtccgacatgggcatc
gccgtgtacgaccaggcgcccgatgccgagacgctgctgctgtccgataacgtggtggcg
gtcagcgacgacgacgcggaagcggccgtcaacaccgcgctgtccagcgtggacgccgac
ttcggccgcaccaccgatccggtgcgcatgtacatgcgcgagatggcgaccgtgccgctg
ttgacccgccagggcgaaatcgagatcgcgcagcgcatcgaagccggcttcaccgacatg
atgcaggcggtgtccgcctgcccggccgcgatcgaggaaatcctggcgcaggtcgagcgc
atcaggaaggacgaaatccgcatcgacgacgtggtcgacggtctggtcgacccgaccacg
ccggatgaggcggccgttgtcgccagcgccgccgacgacgaggaagacgacgaggaactg
gacgaagacgccgccgacgacgaggaagacgacagcacgtccggcagcggcgcggccagc
ctgtcggaagagcagctggcgcagctgcagaagaccgcgctggagcgcttcgcgctgatc
gcggcgcatttcgacaagatgcgcgccgtggccgaacaggaaggcacgcattccaacgcc
taccgcgaagcgcaacagacgatcaccgccgacctgctcggcatgcgctttaccgccaag
atggtggaaaagctgtgcgacatgctgcgctcccaggtcgaggaagtgcgccgcctggaa
cgccagatcctcgatatcgcggtcaacaagtgcggcatgccgcgcgagcatttcatcaag
gttttcccgggcaacgagaccaacctggcctgggtcgatgccgaagccgacagcgacaag
gcctatgccgtcacgctgcgccgccacatcccggcggtgaaggaataccagaagcggctg
ggcgacctgcaggcgcgcgtggcgctgccgctggcagaactgcgcaagatcaacaagcag
atgacgaccggcgagatgaaggcgcgcaacgccaagcgcgagatggtggaagccaacctg
cgcctggtaatttcgatcgcgaagaagtacgtcaaccgcggcctgcagttcctcgacctg
atccaggaaggcaatatcggcttgctcaaggcggtggacaagttcgaataccgccgcggc
tacaagttctcgacctatgcgacctggtggatccgccaggccatcacgcgcgccatcgcc
gaccaggcgcgcaccatccgcgtgccagtgcacatgatcgaaacgatcaacaagatgaac
cgcatctcgcgccagatcctgatggagaccggttccgagccggacgccgcgatgctggcg
aagaagatggacatgccggaaaagaaggtgcgcgaaatcctgaagatcgccaaggagccg
gtgtcgatggatacgccgatgggcgacgacggcgactcgcagctgggcgacttcatcgag
gacagctccacgctgtcgccagccgacgccgcgctgcacgcatcgatgcgcaacgtgatc
aaggatgtgctggactcgctgccggcgcgcgaagcgaaggtgctgcgcatgcgctacggg
atcgacatggcgagcgacgccacgctggaagaagtcggcaagcagttcgacgtcacccgc
gagcgcatccgccagatcgaatcgaaggcgatgaacaagctgcgccacgcctcgcgcgcg
gaccggctgcggactttcctggaaagtaattaa
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