Nonlabens sp. MIC269: AAT17_05965
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Entry
AAT17_05965 CDS
T04144
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nom
Nonlabens sp. MIC269
Pathway
nom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAT17_05965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nom03400
]
AAT17_05965
Enzymes [BR:
nom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAT17_05965
DNA repair and recombination proteins [BR:
nom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAT17_05965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALM20800
LinkDB
All DBs
Position
complement(1256722..1260066)
Genome browser
AA seq
1114 aa
AA seq
DB search
MSYTSILERFKSLSQTNVLNDLVQDAKGYHTISGLNGSSYSMLIKVLFDQAEKPFLLICD
DKEQAAYYLNDLEQSIGEDHVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAV
IVTYPDALFEKVVTRKELEKNTLKISVGDQITVDFANEVLFEYEFKRVDFVTEPGEFSLR
GGILDVFSFSNDEPYRIEFFGNEIDSIRVFDVETQLSKEQVRKISIIPNVEHKKLEETRE
SFLKYLSNKTSIFAFHLELLYGRLDSLFAKAEQEYNNLQGEIRQLTPQEIFANSELIKKQ
LKEYNHFEFVANQGEIAFKTQPQPSFNKQFELLIENLETNKADGIKNYIFCGTAQQAKRF
HDIFDDMNATVEYETVVAPLYRGFISYDLRIACYTDHQIFERYHKFHLKNGYAKKQAITL
KELNSLEIGDYVTHIDHGIGKFGGLQKVDQNGKQQEAIKLIYGERDILYVSIHSLHKITR
FSSKDGKPPKIYKLGSPAWKKLKQKTKKKVKEIAFDLIKLYAKRKSKKGFQYAPDGYLQN
ELEASFIYEDTPDQSAATADVKADMESDKPMDRLVCGDVGFGKTEVAIRAAFKAAVNGKQ
VAVLVPTTILAFQHAKSFKERLSDLPVKVDYLNRFRTAKERRAVLDGLADGSIDIVIGTH
QLVNKSVRFKDLGLLIIDEEQKFGVAVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTPPPNRHPVETKVVRFSEEVIRDAVSYEISRGGQVFFVHNRIENIKEVAGMIQR
SVPDAKIGIGHGQMDGKKLEELMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTDDARKRIQAIETFSDLGSGFNIAMKDLE
IRGAGDILGGEQSGFMNEIGFDTYQKILAEAISELKENEFKDLYIEDEVDKKHVTDVNID
TDFELLFPDDYINSITERLSLYSKLNEVENEDELENYRKELVDRFGELPDEAEDLLTSIR
IKWIAANMGLEKIVMKNGKFVGYFVSDQQSDFYQSPAFGKVLQAVQSHPRHFKMKEKQTR
AGLRLLLTIPDIKTVDKAFEALNKILPLPDNEKA
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatacttctatattagagcgttttaaaagcttatcacaaaccaacgttttaaat
gacctagttcaagatgcaaagggctatcatactattagtggattaaatggtagtagttat
tccatgttgataaaggttctttttgatcaggcagaaaaaccgtttttacttatatgtgat
gataaggaacaagcagcgtattatttaaatgatctagaacaaagtataggagaagatcac
gtgctattttatccaggtagttatcgcaggccttatcaaattgaggagactgacaatgcc
aatgtattgttacgagctgaggttctcaataggattaactctagaaaaaaaccagcggta
atcgtcacttatccagatgctttgtttgaaaaggttgtgactcgcaaagaacttgaaaaa
aatactcttaaaatttcggttggtgatcaaatcaccgttgattttgctaacgaagtttta
ttcgagtacgagtttaaaagagttgattttgtaactgagccaggagaattttccctgaga
ggaggaatattagatgtgttctcttttagtaacgacgagccctatcgaattgagtttttt
ggaaatgaaatcgattccattcgagtttttgatgttgaaacccaattaagtaaggaacag
gttagaaaaatctctattattccaaatgttgagcacaaaaaactcgaagaaactagagag
agttttcttaaatacctgtctaataagactagtatttttgcttttcacttagaactactc
tacggtcgattagactcgcttttcgcgaaagcggaacaagaatataacaatttgcaaggc
gaaatacgtcaattaactccacaggaaatttttgcaaattctgagcttatcaaaaagcag
cttaaagaatataatcactttgaatttgttgccaatcaaggagaaatagcattcaagaca
cagccacaaccatcttttaacaagcagtttgagttattgattgaaaatcttgaaactaac
aaagcagatggtatcaagaactatatcttttgtggtactgcacaacaagcaaaacgtttt
catgacatttttgacgacatgaatgctaccgtcgagtatgaaaccgtagtagctccttta
tatcgtggatttataagttatgatttgcgtattgcatgttatactgatcatcaaatattt
gaacgatatcataagtttcatctcaaaaatggatacgcaaaaaaacaagcgattacctta
aaggaacttaactcgctcgagattggagattatgttactcatattgaccatggaataggg
aaatttggtggattacaaaaggttgatcaaaatggtaaacaacaagaggccattaaatta
atttacggtgaacgagatatcttgtatgtatcaattcattccttacataaaatcacccga
ttttcaagtaaagatggtaaaccaccaaaaatttacaaattaggtagtccagcctggaag
aaactgaaacaaaaaactaagaaaaaggtaaaggaaattgcttttgatcttatcaaactt
tacgcaaaacgtaaatcaaaaaaaggatttcagtatgcgccagatggttatttgcaaaat
gaactcgaggctagttttatctatgaagatacaccagatcaaagtgcagccaccgccgat
gtaaaggccgacatggaaagcgataagccaatggatagattggtttgtggtgatgtaggt
tttggtaagacagaggtagctataagagctgcctttaaagcagcggttaatggaaaacaa
gtcgccgttcttgtgcctacaactattttagcttttcagcatgctaaatcttttaaagaa
cgattgtcagatttacctgtgaaggtagattacttaaaccgtttcagaacagcaaaagaa
cgacgagcagttcttgatggactagccgatggaagtatcgatatcgtaataggaacccat
caactggtaaataaatctgttcgttttaaggatctcggacttttgattattgatgaggag
caaaaatttggagttgcagtaaaagataaattaaagacccttaaagaaaatatcgatacg
ctcacgttaacagcgacacctattcctagaacacttcagttctcattaatggctgctcgt
gatttaagtgttataaaaacaccaccgcctaatagacatcctgtcgaaacaaaggtggtt
cgttttagtgaagaggtaattcgtgatgctgtgagttatgaaatctcaagaggcggacaa
gtgttttttgtccataatcgaatcgagaatataaaggaagtagcaggaatgattcaaaga
tctgtacccgatgcaaaaattggtataggtcatggtcaaatggatggtaaaaaattagag
gaactcatgctttcatttatgaacggtgagtttgatgttcttgtttcaacaaccataatt
gaaagtggtctggatgtcccaaatgctaatacgatttttataaataacgctaataacttt
ggtttatctgatctacatcaaatgagaggtagagtagggcgtagtaataaaaaagccttt
tgttacttcataacgccaccctatgaggttatgactgatgacgcacgtaaacgtatccag
gcaattgaaacattttctgatttaggaagtggtttcaatatcgcaatgaaagatcttgaa
atacgtggagctggagacattttaggtggtgaacaaagcggttttatgaatgaaattggt
tttgatacctatcaaaaaatccttgccgaagctatttctgaattaaaagaaaatgaattc
aaggatctttatatcgaggatgaagtagataaaaaacatgttactgatgtcaatatagat
actgattttgaattattatttccagatgattatatcaactccattacagaaagattatcg
ctttattcaaaattgaatgaggtggaaaacgaggatgagttagaaaattatcgaaaagaa
ttagtagatcgttttggagaattaccagatgaagcagaagacttacttacaagtattcgt
ataaagtggattgctgctaatatggggcttgaaaaaatcgtcatgaaaaatggaaaattt
gtaggctactttgtaagtgatcaacaaagtgatttttatcaatcgccagcatttggaaag
gtgttacaagcagttcaatctcatcctagacattttaagatgaaggagaaacaaacaaga
gctggtttacgtttattactcactataccagatattaaaacagttgataaagcatttgaa
gctttaaataaaatattaccattgccggacaatgaaaaagcttaa
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