Nocardioides sp. S-1144: FE634_04545
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Entry
FE634_04545 CDS
T06354
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FE634_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noo03400
]
FE634_04545
Enzymes [BR:
noo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FE634_04545
DNA repair and recombination proteins [BR:
noo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FE634_04545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QCW49866
UniProt:
A0A5B7R706
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All DBs
Position
919085..920020
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AA seq
311 aa
AA seq
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MRPMLATKGDHVPTGEEWAHEVKWDGMRILADTRPAGRAGGSGTRLTSRNDNDVTAAWPD
VADAPLADRDHLVDGEVIALNERGLPDFRVLQERMHVRRATSVARLVHQVPVTFMIFDLL
RLDGRDLLAEPLATRRALLAETFEGSAWQVPPSYDDGPMLLDATREQGLEGIVSKRLSAP
YRPAERSPHWLKFAHRHRESFVVGGWRPQEGTTDRLAALLVGEPTPDGLRYRGRVGSGIA
ARQSRVLAEAVAGLARADSPFADEVPRVDALGTRWCEPVLVVDVDSHGRGYDRLRQPSFR
GLRTDLGAADL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccatgctcgccaccaagggcgaccacgtgcccacgggcgaggagtgggcccac
gaggtcaagtgggacggcatgcgcatcctcgccgacacccgccccgccggccgggcgggc
gggagcggcacccggctcaccagccgcaacgacaacgacgtcaccgccgcctggcccgac
gtcgccgacgcgccgctcgccgaccgcgaccacctcgtcgacggcgaggtgatcgcgctc
aacgagcgcggcctgcccgacttccgggtcctccaggagcggatgcacgtgcggcgggcc
acctcggtggcccggctggtgcaccaggtgccggtcacgttcatgatcttcgacctgctc
cgcctcgacggccgcgacctgctcgccgagccgctcgccacccgccgcgcactgctggcc
gagaccttcgagggcagcgcctggcaggtgccgccgtcctacgacgacggcccgatgctg
ctcgacgccacccgcgagcagggtctcgagggcatcgtcagcaagcggctctccgcgccg
taccgcccggcggagcgctcgccgcactggctgaagttcgcccaccgccaccgggagtcc
ttcgtcgtcggcgggtggcggccgcaggagggcaccaccgaccgcctcgccgccctgctc
gtcggcgagcccacccccgacggcctgcgctaccggggccgggtcggcagcggcatcgcg
gccaggcagagccgggtgctggccgaggcggtggccgggctggcccgcgccgacagcccg
ttcgccgacgaggttccgcgcgtcgacgcgctcggcacccggtggtgcgagccggtgctc
gtcgtcgacgtcgactcccacgggcgcgggtacgaccggctgcgccagccgtcgttccgc
ggcctgcgcaccgacctgggagcagccgacctgtga
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