Nocardioides sp. S-1144: FE634_05685
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Entry
FE634_05685 CDS
T06354
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noo
Nocardioides sp. S-1144
Pathway
noo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE634_05685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noo03400
]
FE634_05685 (mfd)
Enzymes [BR:
noo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE634_05685 (mfd)
DNA repair and recombination proteins [BR:
noo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FE634_05685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCW52425
UniProt:
A0A5B7RIS6
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All DBs
Position
1148416..1151988
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AA seq
1190 aa
AA seq
DB search
MSLPALARLVLATPPYAALSQRARAAAPGDSALDLTGPAALRPFVTAALAAADRTVLVVT
ATTREAEELTVELGDLVGPEVVAHYPSWETLPHERLSPRSDTVGKRLAVLRRLVHPGDDA
SNGPLRVVVAPVRSVLQPQVKGLADLEPVELSVGDTVGHDALVRRLADAAYSRVDLVERR
GEFAVRGGIVDVFPPTEEHPLRVELWGDDVEEIRSFSVADQRTLDKVERLWAPPCRELLL
TDEVRARAAELGRAHPQLLELTDKIAAGIATEGMESLAPVLVDDMELLVDLLPGATHVLV
VDPERVRSRAHDLVATSEEFLGASWAAAASGGTAPIDLGAASYRSIGDVRELTLAAGRSW
WTLSPFGLGDAAGEAGDTAVGRLDSDVTLTASPVPPYHGDVERAMDDLARWSGEGYHVVA
VHPGHGPAQRMVEVLGERDVPARLVEPADAVDAAVVSVTCGSLTHGFVDDQARIAIVTSE
DVSGQKASTRDMRKMPARRKKQIDPLELKAGDHVVHEQHGVGRFVEMKQREVQGATREYL
VLEYGASKRGAPPDRLYVPADALDQVTRYVGGEQPALDRLGGADWTKRKNRARKAVREIA
AELIKLYAARQATKGYAFGPDTPWQRELEDAFPFTETPDQLSTVEEVKSDMRQVVPMDRL
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHLSTFSERMSGFPVVIKGLSR
FQTDKEAKEVAAGLAEGSIDIVVGTHRLLNPDIRMKDLGLIIVDEEQRFGVEHKEQMKRL
RTSVDVLSMSATPIPRTLEMSITGIREMSTITTPPEERHPVLTYVGGYEDRQVTAAVRRE
LLRDGQVFYIHNRVSSIDKAASRIRELVPEARVAVAHGQMNEKLLEQVMLDFWEKTFDVL
VCTTLVESGLDVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPEKPLTET
AHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVNE
FKGTPDADQGLNEVRIELPIDAHLPHDYIESERLRLEMYRRLAEVRTDDDVDVLAEEMVD
RYGEPPVEVLSLQLVARFRARARQAGIGEVTIAGRNVRFAPVVLPESRTVRLGRLYPKSI
VKHAVDTVLVPRPGTPGATGRPLEGIALLEWARGVIDSVLDPKPTQESSS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgcccgccctggcccgcctcgtcctggcgacgccgccgtacgccgccctgtcg
cagcgggcgcgtgccgccgcgccgggcgactcggccctcgacctcaccggcccggccgcg
ctccgcccgttcgtgacggcggcgctggccgccgccgaccgcaccgtcctggtcgtcacc
gcgaccacccgcgaggccgaggagctcaccgtcgagctcggcgacctcgtcggacccgag
gtcgtcgcgcactaccccagctgggagacgctgccgcacgagcggctgagcccgcgcagc
gacaccgtcggcaagcgcctggcggtgctgcgccggctggtccaccccggtgacgacgcc
agcaacggcccgctccgggtcgtcgtcgccccggtccggtcggtgctccagccgcaggtg
aaggggctggccgacctcgagccggtcgagctctccgtcggcgacaccgtcggccacgac
gcgctggtccggcgtctcgccgacgccgcctactcccgagtcgacctggtcgagcggcgc
ggcgagttcgccgtgcgcggcggcatcgtcgacgtgttcccgccgaccgaggagcacccg
ctgcgcgtggagctctggggcgacgacgtcgaggagatccgctcgttctcggtggccgac
cagcgcaccctcgacaaggtcgagcgcctgtgggcgccgccgtgccgcgagctgctgctg
accgacgaggtccgcgcccgcgcggccgagctcggccgcgcgcacccccagctcctcgag
ctgaccgacaagatcgccgccggcatcgcgaccgagggcatggagtcgctggccccggtg
ctggtcgatgacatggagctgctcgtcgacctcctgccgggcgccacccacgtgctggtc
gtcgaccccgagcgggtccgcagccgcgcccacgacctcgtcgcgaccagcgaggagttc
ctcggcgcgagctgggcggccgcggccagcggcggcaccgccccgatcgacctcggtgcc
gcgtcctaccgctcgatcggcgacgtgcgcgagctgaccctggccgcgggtcgctcctgg
tggaccctgagcccgttcgggctcggcgacgccgccggcgaggccggcgacaccgcggtc
ggccggctcgacagcgacgtcaccctgacggcgtcgccggtcccgccctaccacggcgac
gtcgagcgggcgatggacgacctggcccgctggagcggcgagggctaccacgtcgtcgcc
gtccaccccggtcacggaccggcccagcggatggtcgaggtgctcggcgagcgcgacgtg
ccggcccggctcgtcgagccggccgacgccgtcgacgcggccgtcgtctcggtgacctgc
gggtcgctgacccacggcttcgtcgacgaccaggcccggatcgccatcgtgaccagcgag
gacgtctcgggccagaaggcctccacgcgcgacatgcgcaagatgccggcgcgccgcaag
aagcagatcgacccgctcgagctcaaggccggcgaccacgtcgtccacgagcagcacggc
gtcgggcgcttcgtggagatgaagcagcgcgaggtgcagggtgccacccgcgagtacctc
gtcctcgagtacggcgcgagcaagcgtggcgccccgcccgaccggctctacgtgccggcc
gacgccctcgaccaggtcacccgctacgtcggcggcgagcagcccgccctcgaccggctc
ggcggtgccgactggaccaagcgcaagaaccgcgcccgcaaggcggtccgcgagatcgcg
gccgagctcatcaagctctacgccgcgcggcaggccaccaagggctacgccttcgggccc
gacaccccgtggcagcgcgagctcgaggacgccttccccttcaccgagacccccgaccag
ctgagcaccgtcgaggaggtcaagtccgacatgcgccaggtcgtgccgatggaccggctg
atctgcggcgacgtcggctacggcaagactgagatcgccgtgcgcgcggcgttcaaggcg
gtccaggacggcaagcaggtcgccgtcctggtgccgacgacgctgctcgtcacccagcac
ctgagcaccttcagcgagcggatgagcggcttcccggtcgtcatcaagggcctgagccgg
ttccagaccgacaaggaggccaaggaggtcgccgccgggctggccgagggcagcatcgac
atcgtcgtcggcacccaccggctgctcaaccccgacatccggatgaaggacctcgggctg
atcatcgtcgacgaggagcagcgcttcggggtcgagcacaaggagcagatgaagcggctg
cgcacgtcggtcgacgtgctcagcatgagcgcgactccgatcccgcgcacgctcgagatg
tcgatcaccggcatccgcgagatgtcgacgatcaccacgccaccggaggagcggcacccg
gtgctcacctacgtcggtggctacgaggaccggcaggtcaccgccgccgtccggcgcgag
ctgctgcgcgacggccaggtgttctacatccacaaccgggtcagctcgatcgacaaggcc
gccagccggatccgcgagctggtgccggaggcccgggtcgcggtcgcgcacgggcagatg
aacgagaagctgctcgagcaggtgatgctcgacttctgggagaagaccttcgacgtcctg
gtctgcacgaccctggtcgagtcgggcctcgacgtgtcgaacgccaacaccatgatcatc
gagcgggccgacaccctcggcctgtcgcagctgcaccagctgcgcggccgggtcgggcgc
tcgcgcgagcgcgcctacgcctacttcctctacccgcccgagaagccgctcaccgagacc
gcccacgagcggctcgcgaccctggcccagcactccgacctcggcggcggcatggcgatc
gcgatgaaggacctcgagatccgcggtgccggcaacctgctcggcggcgagcagtcgggg
cacatcgccgacgtcgggttcgacctctacgtccggctggtcggcgaggccgtcaacgag
ttcaagggcaccccggacgccgaccaaggactcaacgaggtccgcatcgagctgcccatc
gacgcgcacctcccgcacgactacatcgagagcgagcggctgcgcctggagatgtaccgc
cgcctcgccgaggtccgcaccgacgacgacgtcgacgtgctggccgaggagatggtcgac
cgctacggcgagccgccggtcgaggtgctgtcgctgcagctcgtcgcgcggttccgggcc
cgggcccggcaggccggcatcggcgaggtcaccatcgccgggcgcaacgtgcggttcgcg
ccggtcgtgctgccggagtcgcgcaccgtgcggctgggccggctctaccccaagtcgatc
gtcaagcacgccgtcgacaccgtcctggtgccgcgaccgggcacgccgggcgccaccgga
cgcccgctcgagggcatcgccctgcttgaatgggcgaggggcgtcatcgacagcgtcctg
gacccgaagcccacccaggagtcgtcatcgtga
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