Nostoc sp. PCC 7524: Nos7524_4721
Help
Entry
Nos7524_4721 CDS
T02363
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nop
Nostoc sp. PCC 7524
Pathway
nop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nos7524_4721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nop03400
]
Nos7524_4721
Enzymes [BR:
nop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nos7524_4721
DNA repair and recombination proteins [BR:
nop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Nos7524_4721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFY50464
UniProt:
K9QZF8
LinkDB
All DBs
Position
5647559..5651146
Genome browser
AA seq
1195 aa
AA seq
DB search
MAFSSIVRALGRSPLTTELLSKLNRQQDLRLNGIPRLPKGLVASALAQNSNRNLLVVCAT
LEEAGRAYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLGGGDWGVGTG
DREEKSLSSTQSPLPNSGVQRSLAVVATVGALQPHLPPPAAFTPLCLTLKRGMEFDLDSF
SEKITLLGYERVPLVETEGQWSRRGDIVDIFPVSSELPVRLEWFGDEIEQIREFDPATQR
SALDKVAQITLTPTSFTPIILEALKDSAEFQVLSSELSSGSEIATQDTAQLPLPLTGIIE
GSRRFLGLAYEKPASILDYLPEDTLIAIDEPEQCHAHSDRWVENAEEQWSLGTGEYELGS
LQLPKIHRCFDDCLVDVTRFKTLYLSEIAEENGGINLASRPVPVTPHQFAKLADTLRQER
DRNFSIWLLSAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHVPVALKYSGLAELE
GFILPTYRLVIVTDREFFGQHSLATPSYIRKRRKAASKQVDPNKLRPGDYVVHKSHGIGK
FVKLESLTINDETRDYIVVQYADGLLRVAADQVGSLSRFRSTGDKAPELHKMTGKAWENT
KNRVRKAIKKLAVDLLKLYAKRSQQEGYAYPQDMPWQEEMEDSFPYQPTTDQLKAVQDVK
RDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHTLKERF
APYPVNVGLLNRFRTAEERRDIQKRLATGELDIVVGTHQILGKGVNFKDLGLLVIDEEQR
FGVNQKEKIKTLKTQIDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPM
NPESIRSAIRQELDRGGQVFYVVPRVEGIEETTSKLREMIPGGRFAIAHGQMDESELEST
MLTFSNGEADILVCTTIIESGLDIPRVNTILIEDAHKFGLSQLYQLRGRVGRAGIQAHAW
LFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFD
LYMEMLEESIREIRGQEIPKVDDTQIDLNLTAFIPADYIPDIDQKMSAYRAVAAAKSKEE
LTQIAAEWSDRYGNLPVPANQLLRVMELKQLAKQLGFSRIKPENKQHVVLETPMEEPAWN
LLAANLPEHLKTRFVYSPGKVTVRGLAVLKADQQLQSLIDAMTKMQGAIVEAAVV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgccttggggcgatcgccactcaccactgagttactt
tctaagttaaatcgtcaacaagatttgcgattaaacggtattcctcgcctacctaaaggc
ttggtagcttcagcattagctcaaaattctaacaggaatttgttagtagtttgtgcgact
ttggaagaagctgggcgcgcttatgcacagttagaagcaatgggatggcaaactgtgcat
ttctaccctacatctgaagcttctccttacgaaccctttgatcctgaaaccgaaatgact
tggggacaaatgcaggtgttggcggatttggggggtggagactggggagtgggaactggg
gacagggaagaaaaaagtctgtctagtacccaatccccgctccctaattccggagtgcag
cgatccttggcggttgtggctactgtgggtgcattacaaccgcatttaccgccgccagca
gcttttacgccattatgtctcaccctcaagcgggggatggaatttgatctggattccttt
agtgaaaaaatcactcttttggggtatgaacgcgtaccgctagtagaaacagaaggtcaa
tggagtcggcgcggtgatattgtggatatctttcctgtgtcttctgagttgccagtccgg
ttggagtggtttggcgatgaaattgagcaaatccgggaatttgatccggcaactcaacgt
tcagcccttgacaaagttgcacaaattaccctcacccctacaagcttcactcctattatc
ttagaagcactcaaagatagtgcggagttccaagtgctgagttctgagttgagttctggc
tcggaaattgctactcaggacactgctcaactcccgcttccactcacaggaattatagaa
ggtagtcggagatttttagggttagcttatgagaagccggcttcgatactggattactta
ccagaggataccctaattgccattgatgagccagaacaatgtcatgctcatagcgatcgc
tgggtggaaaatgcggaggaacaatggtcattaggaactggggaatatgagttgggttcg
ctgcaattacccaaaattcatcgttgttttgatgactgtctcgttgatgttactagattt
aaaactttatacctatcagaaatagccgaggaaaatggcggaattaatttagctagtcgg
cctgtacctgtgacaccgcatcaatttgccaaactcgcggatacactacgccaagaacgc
gatcgcaatttctcgatttggttactttctgctcaaccttcccgttctgtctccctctta
caagaacacgattgtccagcacagtttattcctaacccccgcgactaccaagccattgac
aagctgcaaatcaatcatgtccctgtagctttgaaatattcgggactggcggaactagaa
ggttttattttaccgacttaccgcttagttatcgtcaccgaccgagaattttttggacag
cattccctcgccacacccagctatatccgcaagcgacgcaaagccgcatctaagcaagtt
gaccccaataagctgcgtccaggggattatgtagttcacaaaagtcatggaattggcaaa
ttcgtgaagttagaaagcttgacgattaacgacgaaacccgtgattacattgtagtgcag
tatgctgatggtcttctaagagtcgccgccgatcaagtaggctcattatctcgctttcgc
agtaccggcgataaagccccagaactgcataaaatgacgggtaaggcttgggaaaatact
aaaaaccgcgtccgcaaggccattaagaaattagcggtagacttgctgaaattatacgcc
aagcgatcgcaacaagaaggttatgcctacccccaagatatgccttggcaagaggaaatg
gaagattcctttccctatcaacccacaactgaccagctaaaagccgtgcaggatgtgaaa
agagatatggaaagcgatcgcccaatggatcgtttagtctgtggtgatgtcggctttggt
aaaacagaagtcgccatccgtgctattttcaaagccgtcacttccggtaaacaagtcgcc
ttacttgcaccaaccaccattcttacccaacaacactatcacaccctcaaagaacggttc
gccccctaccccgtgaacgtcggcttacttaaccgtttccgcaccgccgaagaacgccgt
gatattcaaaagcgtttagctacaggggaattagatatagttgtcgggacacaccaaatt
ttaggcaagggtgtaaacttcaaagacttagggctgttggtaatcgacgaagaacaaaga
tttggggtgaaccaaaaagagaaaattaaaaccctgaaaacccaaattgatgttttgact
ctctccgctactcctattccccgtaccttatatatgtctctatcggggattcgggaaatg
agtttaattactactccaccccctacccgcagaccaattcaaactcacctttcaccgatg
aatcccgaaagcatacggagtgctattcgtcaagagttagacagaggtggacaggtattt
tatgtagttccacgggtggaaggaattgaagaaacaacctctaaactgcgagaaatgatc
cctgggggaagatttgcgatcgctcacggtcaaatggacgagagcgagttagaatccacc
atgctcacctttagtaatggtgaagcagacatcttagtctgtaccacaattattgaatcg
ggtttagatattcctcgcgtcaacactatcttaattgaagacgcgcacaagttcggttta
tcgcaactataccaattacgcggacgggtaggacgtgcaggaattcaagcccacgcttgg
ttattttatcccaaacaacgggcgttatctgatgccgcacggcaacggttacgggcgatt
caggaatttacacaactgggttctggctatcagttagcaatgcgcgacatggaaatcaga
ggcgtgggtaacttactcggtgcagaacaatccggtcaaatggaagctatcggttttgat
ttatacatggaaatgttagaagaatcaatccgagaaattcgcggtcaagaaatacccaaa
gttgacgatacacagattgacctcaacctgactgcatttatcccggctgattatattccc
gatattgatcaaaagatgagtgcatatcgtgcagtagccgcagcaaaatccaaagaagag
ttaacgcagattgcagcagagtggagcgatcgctatggtaatttaccagttcccgcaaat
caactattgcgcgttatggaactcaaacaactagcaaaacaattaggatttagccgcatc
aaaccagagaacaaacagcacgttgttttagaaaccccaatggaagaaccagcttggaat
ttattagccgcgaacttaccagaacatctcaagacgcgtttcgtttactctcctggtaag
gtgactgtacgtggtttagcagtgctaaaagccgaccaacaattgcagagtttaattgat
gctatgaccaaaatgcaaggtgcgatcgtagaagcggctgttgtttaa
DBGET
integrated database retrieval system
