Nocardioides okcheonensis: LN652_07760
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Entry
LN652_07760 CDS
T07822
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LN652_07760 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_07760 (ligD)
Enzymes [BR:
noq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LN652_07760 (ligD)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LN652_07760 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UFN46703
LinkDB
All DBs
Position
complement(1605005..1605919)
Genome browser
AA seq
304 aa
AA seq
DB search
MLASKADRVPTGAEWLHEVKWDGVRVLVDAHDGVVRMTSRNDNDVTPAWPDLSAPPLGGR
DLLVDGEVIALNDRGVPDFRVLQHRMHVRNRQEVARLVTRVPATLMVFDLLRLDGEDLTT
RPLEERRALLEELPLAESRWQVPAAYDDGDMLFTATLQQGLEGVVSKRRGSRYHFDRRSD
DWRKLAHRHRGSFVVGGWRPQVGTQDRLAALLVGEVTEDGLAYRGRVGSGIAGATSARLA
RLLEPYAADASPFADEVPKEDARGTFWVEPRIVVDIDTHGLGYDRLRQPSFQGVRDDLTP
EDLR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcctccaaggccgaccgcgtgccgacgggggcggagtggctccacgaggtgaag
tgggacggcgtacgcgtcctggtcgacgcccacgacggcgtggtgcggatgaccagccgc
aacgacaacgacgtcacgcccgcgtggcccgacctgagcgccccgccgctgggcgggcgc
gacctgctcgtcgacggcgaggtgatcgcgctcaacgaccgaggcgtgcccgacttccgg
gtcctgcagcaccggatgcacgtccgcaaccggcaggaggtcgcgcgcctggtgacgcgg
gtgcccgccacgctgatggtcttcgacctgctccgcctcgacggcgaggacctcacgacc
cggccgctggaggagcgtcgcgcgctgctcgaggagctgccgctggccgagtcgcgctgg
caggtgcccgcggcgtacgacgacggcgacatgctcttcaccgccaccctgcagcagggg
ctcgagggggtcgtcagcaagcgccgcggctcgcgctaccacttcgaccggcgcagcgac
gactggcgcaagctcgcccaccgccaccgcggctcgttcgtggtcggcggatggcgcccg
caggtcggcacgcaggaccggctcgccgcgctcctggtcggggaggtcaccgaggacggc
ctggcctaccgcggccgcgtcggcagcggcatcgccggcgcgacgagcgcccggctcgcc
cggctgctcgagccgtacgccgccgacgcctcgccgttcgccgacgaggtcccgaaggag
gacgcccgcggcaccttctgggtcgagccgcggatcgtggtcgacatcgacacccacggg
ctgggctacgaccggctgcgccagccgtcgttccagggcgtgcgcgacgacctgacgccg
gaggacctccggtga
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