Nocardioides okcheonensis: LN652_08810
Help
Entry
LN652_08810 CDS
T07822
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN652_08810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_08810 (mfd)
Enzymes [BR:
noq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN652_08810 (mfd)
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LN652_08810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AA_kinase
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UFN46282
LinkDB
All DBs
Position
complement(1808835..1812419)
Genome browser
AA seq
1194 aa
AA seq
DB search
MPTTPLTAVAQRLASAPALGGALADTSVVSALDLTGPAAVRPFVVRGLVERGRTVLAVTA
TSREAEDLVEELADLVDPDTVAYYPSWETLPHERLSPRSDTVGRRLAVLRRLRHPGTDAA
NGPLQVVVAPIRSLLQPQVPGLADIEPVELAPGDARALEDVVRGLADAAYSRVDMVERRG
EFAVRGGIVDVFPPTEEHPLRVEFWGDDVEEIRAFSVADQRTLETVQRLWAPPCRELLLT
DEVRRRAAALGEAHPQLLELTDKMAAGIAVEGMESLAPALVDSMELLVDLVPTDTTVLVL
DPERARTRAHDLVATSEEFLGASWAAAAGGGTAPIDLGAASYREIADVRQHAIGLGLAWW
SVSPFGIEQDGTGEATDPVDAQTAGVPSRLLPTHAADAYRGDLQKAVDDIRTWVTDGLDV
VVVHAGHGPATRFVELLGENDIAARVVEEGDTAGPGVVTVTCGHLVHGLVDDSAGVAVLT
GDDLSGQKASTRDMRRMPARRKRQIDPLELKAGDYVVHEQHGVGRFVEMKQREIGGAVRE
YLVLEYGPSKRGGPNDMLYVPADTLDQVTRYVGGENPSLDRLGGGDWTKRKNKARRAVRE
IAAELIKLYAARQATQGHAFGPDTPWQRELEDAFPFTETVDQLTTVDEVKADMRRVVPMD
RLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHLSTFSERMSGFPVVIRGL
SRFQTDKEAAEVVAGLADGSIDIVVGTHRLLNPDIRVKDLGLIIVDEEQRFGVEHKEQMK
RMRTSVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTYVGAYEDRQVVAAVR
RELLREGQVFYIHNRVQSIEKAAARIKELVPEARVATAHGQMNERQLEQVMVDFWEKRFD
VLVCTTLVESGLDVSNANTMIIERSDTLGLSQLHQLRGRVGRSRERAYAYFLYPAEKPLT
ETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAV
ADFKGGNDEELAEVRIELPVDAHLPHDYIPSERLRLEIYKRLAEVRADADVDEVRAELVD
RYGTPPEVVESLLVVARFRARCRQAGVKEVTLAGKNVRFAPVDLPESRVVRLQRLHPRSI
VKAPVSTILVPRPQPSGFPVQPVTGVALLEWARSVIDDIIDVPAPAAPATASKE
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaccacgcccctgaccgccgtcgcccagcgcctcgcctccgcacccgccctcggc
ggtgccctcgccgacacctcggtcgtgtccgcgctggacctcaccgggcccgcggcggtg
cgtccgttcgtggtgcgcggccttgtcgagcggggtcgcaccgtgctcgcggtgacggcg
acgtcgcgcgaggccgaggacctcgtcgaggagctcgccgacctcgtcgaccccgacacg
gtcgcctactacccgagctgggagacgctgccgcacgagcggctcagcccgcgcagcgac
accgtcggccggcggctggcggtgctgcgccggctgcgccacccaggcaccgacgccgcc
aacgggccgctgcaggtcgtggtggcgccgatccgcagcctgctgcagccccaggtgccg
ggcctggccgacatcgagccggtcgagctcgcgccgggcgacgcccgcgcgctcgaggac
gtcgtgcgcggcctggccgacgcggcgtactcccgcgtcgacatggtggagcggcgcggc
gagttcgccgtccgcggcggcatcgtcgacgtcttcccgcccaccgaggagcacccgctc
cgcgtcgagttctggggcgacgacgtggaggagatccgcgccttctccgtcgccgaccag
cgcaccctcgagacggtgcagcggctctgggccccaccgtgccgcgagctcctcctcacc
gacgaggtgcgtcgccgtgccgcggccctcggcgaggcccacccgcagctgctcgagctc
accgacaagatggcggccggcatcgccgtcgagggcatggagtcgctcgcccccgcgctc
gtcgactcgatggagctcctcgtcgacctggtgcccaccgacaccacggtcctcgtgctc
gaccccgagcgtgcccgcacccgcgcccacgacctcgtcgcgaccagcgaggagttcctc
ggggcctcgtgggccgcggccgccggcggcggcaccgcgccgatcgacctcggcgccgcg
tcctaccgcgagatcgccgacgtgcgccagcacgcgatcggcctcggcctggcgtggtgg
tcggtcagccccttcgggatcgagcaggacgggaccggcgaggccaccgacccggtcgac
gcgcagaccgccggtgtcccgagccggctgctccccacccacgcggccgacgcctaccgc
ggcgacctgcagaaggccgtcgacgacatccgcacctgggtcaccgacggcctcgacgtg
gtcgtggtccacgccggccacggcccggccacccgcttcgtcgagctgctcggcgagaac
gacatcgccgcgcgcgtggtcgaggagggcgacaccgccggaccgggcgtcgtcaccgtc
acgtgcggccacctcgtgcacggcctggtcgacgactccgccggcgtcgccgtcctcacc
ggcgacgacctgtcgggccagaaggcctcgacgcgcgacatgcgccggatgcccgcgcgg
cgcaagcggcagatcgaccccctcgagctcaaggccggcgactacgtcgtgcacgagcag
cacggcgtgggccgcttcgtggagatgaagcagcgcgagatcggcggcgccgtccgcgag
tacctcgtcctggagtacggcccgagcaagcgcggcgggcccaacgacatgctctacgtc
ccggccgacaccctcgaccaggtcacccgctacgtcgggggcgagaaccccagcctcgac
cggctcggcggcggcgactggaccaagcgcaagaacaaggcccgccgcgccgtccgcgag
atcgccgccgagctgatcaagctctacgccgcccgccaggccacccagggccacgcgttc
ggcccggacaccccgtggcagcgcgagctcgaggacgcgttcccgttcaccgagaccgtc
gaccagctcaccacggtcgacgaggtgaaggccgacatgcgccgcgtggtcccgatggac
cgcctcgtgtgcggtgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttc
aaggccgtccaggacggcaagcaggtcgcggtgctggtgccgacgaccctgctcgtcacc
cagcacctgtcgaccttctcggagcggatgtcgggcttcccggtcgtgatcaggggcctg
tcgcgcttccagaccgacaaggaggccgcggaggtcgtcgccggcctcgcggacgggtcg
atcgacatcgtcgtcggcacccaccgcctgctcaaccccgacatccgggtcaaggacctc
ggcctgatcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagatgaag
cggatgcgcacgtcggtcgacgtgctctcgatgagcgcgacgcccatcccgcgcaccctg
gagatggccgtcaccggcatccgcgagatgtccacgatcaccaccccgccggaggagcgc
cacccggtgctcacctacgtcggcgcctacgaggaccgccaggtggtggcggcggtgcgg
cgcgagctgctgcgcgagggccaggtcttctacatccacaaccgggtgcagtcgatcgag
aaggcggccgcacggatcaaggagctcgtgcccgaggcgcgggtcgcgaccgcccacggc
cagatgaacgagcgccagctcgagcaggtcatggtggacttctgggagaagcgcttcgac
gtcctggtctgcacgacgctcgtggagtcggggctcgacgtgtccaacgccaacacgatg
atcatcgagcgctccgacaccctcggcctgtcccagctgcaccagctgcgcggtcgcgtg
ggtcgctcgcgcgagcgcgcctacgcctacttcctctaccccgcggagaagccgctcaca
gagaccgcccacgagcggctcgcgacgctggcccagcactcggacctcggcggcggcatg
gccatcgcgatgaaggacctcgagatccgcggcgccggcaacctgctcggcggcgagcag
tccggccacatcgccgacgtcggcttcgacctctacgtccgcctcgtcggcgaggcggtc
gccgacttcaagggcggcaacgacgaggagctcgccgaggtccgcatcgagctccccgtc
gacgcccacctgccccacgactacatcccgtcggagcggctgcgcctcgagatctacaag
cggctggccgaggtgcgtgccgacgccgacgtcgacgaggtgcgcgccgagctcgtcgac
cgctacggcacgccgccggaggtcgtggagtcgctgctggtcgtggcgcggttccgcgcc
cgctgccgccaggccggggtgaaggaggtgaccctcgcgggcaagaacgtccggttcgcg
ccggtcgacctgcccgagtcgcgcgtcgtacgcctccagcggctccacccgcgcagcatc
gtcaaggcaccggtcagcaccatcctcgtgccgcgcccgcagccgtcgggtttccccgtg
cagcccgtcacgggcgtcgccctgcttgaatgggcccggagtgtgatcgacgacatcatc
gacgtgccggcgccggccgcgcccgccaccgcgagcaaggagtga
DBGET
integrated database retrieval system
