Nocardioides okcheonensis: LN652_19345
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Entry
LN652_19345 CDS
T07822
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
noq
Nocardioides okcheonensis
Pathway
noq03420
Nucleotide excision repair
noq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN652_19345
03430 Mismatch repair
LN652_19345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noq03400
]
LN652_19345
Enzymes [BR:
noq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN652_19345
DNA repair and recombination proteins [BR:
noq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LN652_19345
MMR (mismatch excision repair)
Other MMR factors
LN652_19345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UFN44176
LinkDB
All DBs
Position
3980059..3983301
Genome browser
AA seq
1080 aa
AA seq
DB search
MTEQAPPQPRPAPEPVRLDTPEDLRVLMKAQHAASDEQWAAITAPLRPTVVVAGAGSGKT
TLMAQRVVWLVATGRVRPEEVLGLTFTTKAAAELRQRVSAALGAAGLLDRSVVAEGEDVL
EPTVATYHAYAANLLTDHGLRIGHEPDTRVVSDASRYQLGARVIERFTGQIELLTDHPAT
AIQNLLALDGAMSEHLVDEDDVRRVDAEARRGFERAIAEEEAGKARKTYLDPPAKAIHAI
DRRAELLQLVAGYRRLKADLGLMDFGDQIALAARLVEDQPEVGEIERARFKVVLLDEYQD
TSVAQATMLARLFSGPDDDHGLGHPVMAVGDPNQAIYGWRGASVSNILNFAETFPAADGE
PGRLPLTVNRRSDRRILEVANRLAQPLLEAYGDKVARLRPAEIAGEGRVETRVHERAVDE
LSWLVEAVARTHASGTDWSDIGVLSRDNAQGEEVYDALTSAGIPVEIVGLSGLVRLPEVA
EVVATLTLLHDVTANTSMLTLLTGPRWAIGPRDLRLLALRAAEIAGVRGRTEAATVADQL
LQIADGIDAAELPALSDAVEAPGDAAYSPEALDRFALLAAELRRLRTHVGDPLLDVVRRI
IDTTGVDVELASATSPAAAARRDNLDLFVKAVAEFQSVDGDVTLPALLAYLTAEDDQGNG
LDVATPTAADSVKLLTVHRAKGLEWSSVFCVGVGETRFPSNRSRTLWTSSPAVLPAPLRG
DRADQPQLVGHDKAALEAYRAATRAHDAEEELRLGYVAYTRAAHHLAVTSYVWGQRATPF
GPSDYQRVVRDQLEEWGEHVEHWIEKPPPRSPNPNDDVDPSKPWPVPGPGEEAARRLAAA
DLVRSVDPTAPDEGLDMVEAARVAEWDEDLAQLITEARAERSTSIDLPLPSSLSATSVAR
LRDDPDAFARDLARPMPRPPAPAARFGTAFHAWVEDRFGQQALIEPDELPGRADAGIDDE
ADLGEVVKRFEDGPFGDRAPHAVEAPFALVLAGQVVRGRIDAVYAEPASAGGGFLVVDWK
TGHHESSDPLQLALYRLAWSELTGTPLEQVRAAFHYVRSGRTVEPPDLPGREELERLLDL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagcaggccccaccccagccccggccggcgcccgagccggtccggctcgacacc
cccgaggacctccgcgtcctgatgaaggcccagcacgccgccagcgacgagcagtgggcg
gcgatcaccgcgccgctgcgaccgaccgtcgtggtcgcgggcgcgggcagcggcaagacc
accctcatggcccagcgggtcgtgtggctggtcgccaccggccgggtccgcccggaggag
gtgctcggcctcaccttcaccaccaaggcagccgccgagctccgccagcgggtcagcgcc
gcgctcggcgccgccggcctgctcgaccgctcggtcgtcgcggagggcgaggacgtcctc
gagcccaccgtcgccacctaccacgcctacgccgccaacctgctcaccgaccacggcctg
cgcatcggccacgagcccgacacccgggtcgtctccgacgcctcccgctaccagctcggc
gcccgggtcatcgagcggttcaccggccagatcgagctcctcaccgaccaccccgcgacc
gccatccagaacctcctcgccctcgacggcgcgatgagcgagcacctcgtcgacgaggac
gacgtacgacgcgtggacgccgaggcgcgccgcgggttcgagcgggcgatcgcggaggag
gaggccggcaaggcccgcaagacctacctcgacccgccggcgaaggcgatccacgcgatc
gaccggcgcgccgagctgctccagctggtcgcgggctaccgcaggctcaaggcagacctc
ggcctgatggacttcggcgaccagatcgccctggccgcgcggctcgtcgaggaccagccg
gaggtcggggagatcgagcgggcgcgcttcaaggtggtcctcctcgacgagtaccaggac
acctcggtcgcgcaggccacgatgctcgcgcggctgttctccggacccgacgacgaccac
ggcctcggccacccggtgatggcggtcggcgaccccaaccaggcgatctacggctggcgc
ggggcctcggtgtccaacatcctcaacttcgccgagaccttcccggccgccgacggcgag
cccggccggctgccgctgacggtcaaccggcgctccgaccgccggatcctcgaggtcgcc
aaccgcctcgcccagccgctgctcgaggcctacggcgacaaggtcgcccggctccgcccc
gccgagatcgccggcgagggccgcgtcgagacgcgggtccacgagcgggccgtcgacgag
ctctcctggctggtcgaggcggtggcgcggacccacgcctccggcaccgactggtccgac
atcggcgtgctcagccgcgacaacgcgcagggcgaggaggtctacgacgccctcacctcc
gccggcatcccggtcgagatcgtcggcctctcgggcctggtccgcctgcccgaggtcgcc
gaggtcgtcgccacgctgaccctgctccacgacgtcaccgccaacacctcgatgctgacc
ctgctcaccggaccgaggtgggcgatcggcccgcgcgacctgcgcctgctcgcgctgcgc
gccgcggagatcgccggggtccgcggccgcaccgaggccgccaccgtcgccgaccagctg
ctccagatcgccgacggcatcgacgccgccgagctgcccgcgctgagcgacgccgtcgag
gcgcccggcgacgcggcgtactcgcccgaggccctcgaccggttcgccctcctcgccgcc
gagctgcgccgcctgcgcacccacgtcggcgacccgctgctcgacgtggtccgccggatc
atcgacaccaccggtgtcgacgtcgagctggcctccgcgacctcgccggcggcagccgcg
cgacgcgacaacctcgacctcttcgtcaaggcggtcgcggagttccagtccgtcgacggc
gacgtcaccctcccggccctgctggcctacctcaccgccgaggacgaccagggcaacggg
ctcgacgtcgcgacgcccacggccgccgactcggtcaagctgctcaccgtccaccgggcc
aagggcctcgagtggtcgtcggtcttctgcgtgggggtgggggagacccgcttcccgagc
aaccggtcgcgcaccctgtggacctcctcgcccgcggtgctgccggccccgctgcgcggc
gaccgggccgaccagccccagctcgtcggccacgacaaggccgcgctggaggcctaccgc
gcggccacgcgcgcgcacgacgcggaggaggagctgcgcctgggctacgtcgcctacacg
cgcgccgcccaccatctcgccgtcacgtcctacgtgtggggccagcgcgccaccccgttc
ggcccgtccgactaccagcgcgtcgtccgcgaccagctcgaggagtggggcgagcacgtc
gagcactggatcgagaagccgccgccgcggtcgccgaaccccaacgacgacgtcgacccc
tcgaagccgtggcccgtcccggggccgggcgaggaggccgcgcgtcgcctcgccgccgcc
gacctggtccgctcggtcgacccgacggcgcccgacgagggcctcgacatggtcgaggcc
gcccgggtcgcggagtgggacgaggacctagcccagctgatcaccgaggcccgtgcggag
cggtccacctcgatcgacctgccgctgccgagcagcctgtcggcgacctcggtcgcgcgc
ctgcgcgacgaccccgacgcgttcgcccgcgacctcgcccggccgatgccgcgcccgccg
gctccggccgcgcgcttcggcacggccttccacgcctgggtcgaggacaggttcggccag
caggcgctcatcgagcccgacgagctccccggacgcgccgacgccggcatcgacgacgag
gccgacctcggcgaggtggtgaagcggttcgaggacgggcccttcggcgaccgcgcgccc
cacgccgtggaggcgccgttcgccctggtgctcgccggccaggtcgtccgcgggcggatc
gacgcggtctacgccgagcccgcctccgccggcggcggcttcctcgtcgtcgactggaag
accggtcaccacgagtcgtccgacccgctccagctggcgctctaccgcctcgcgtggtcc
gagctcaccggcaccccgctcgagcaggtgcgcgccgccttccactacgtccgctccggc
cgcaccgtcgagccccccgacctccccggccgcgaagagctcgagcgcctgctcgacctc
tga
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