Nostoc sp. PCC 7107: Nos7107_4315
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Entry
Nos7107_4315 CDS
T02362
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nos
Nostoc sp. PCC 7107
Pathway
nos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nos7107_4315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nos03400
]
Nos7107_4315
Enzymes [BR:
nos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nos7107_4315
DNA repair and recombination proteins [BR:
nos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Nos7107_4315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFY44859
UniProt:
K9QIG9
LinkDB
All DBs
Position
complement(5028678..5032184)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAFSSIVRALARSPLTTELLSKLNRQKDLRLNGISRLPKGLVASALAQNSGKNLFVVCAT
LEEAGRAYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKSQGSVNGQ
NKIIAVVATTGALQPHLPPPEAFSPLSLTLKKGMEFDLNAFSTKITTLGYERVPLVETEG
QWSRRGDIVDIFPVSSELPVRLEWFGDEIEQIREFDPTTQRSALDKIAQIVLTPTSFTPI
ILDALKDSAEFRMLSAELNTESSLDHQESAILEGSRRFLGLAFEKPASVLDYLPENTLIA
IDEPEQCHAHSDRWVENAEEQWSLGTGELDLGAVQLPKIHRSFDDCLAELTQFLTVYLSE
IAEENNGINLASRSVPVTPHQFGKLAETLRQERDRNFSIWLISAQPSRSVSLLQEHDCPA
QFIPNPRDYQAIEKLQINHTPVALKYSGLAELEGFILPTYRLVIITDREFYGQHSLATPG
YIRKRRKAASKQVDPNKLRPGDYVVHRSHGIGKFVKLESLTFNDETRDYIVVQYADGLLR
VAADQVGSLSRFRTTGDKAPELHKMTGKAWDNTKNRVRKAIKKLAVDLLKLYAARSQQQG
YAYPHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMERDRPMDRLVCGDVGFGKTEVAIR
AIFKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRTIQKRLA
TGELDIVVGTHQLLGKSVSFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIP
RTLYMSLSGIREMSLITTPPPTRRPIKTHLSPRNPESVRSAIRQELDRGGQVFYVVPRVD
GIEEITANLREMVPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRV
NTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLG
SGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQVDDTQID
LNLTAFVPADYIPDIDQKMSAYRAVAAAKSQEELTQIAAEWSDRYGTLPVPANQLLRVME
LKQLAKKLGFSRIKPENKQHVILETPMEEPAWNLLAANLPEHLKTRFVYSPGKVTVRGLA
VMKADQQLQSLIDAMGRMQGAIAEAVVV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgccttagcgcgatcgcctctcaccacagaactgctt
tccaaactcaatcggcaaaaagatttacgcttaaatggaatttcccgtctacccaagggt
cttgtagcatcggcattagcgcaaaattcaggcaaaaatttatttgtagtctgtgccacc
ctagaggaagccggacgcgcttacgctcaattagaggcgatgggatggcaaacagtccat
ttttaccccacttcggaagcatccccttacgaaccttttgaccccgaaacggaaatgact
tggggacaaatgcaggttttggcggatttggtgaagagtcaaggttcagtcaatggtcaa
aataaaataatagcggtggttgctactacgggggcgttacagccgcatttaccgccacca
gaggctttttcaccccttagcctcaccttaaagaaggggatggaatttgacttaaatgct
ttcagtaccaaaattactaccttgggttacgaacgagtacctctggtagaaacagaagga
caatggagtcggcgcggtgatattgttgatatttttccagtatcttcagaattgccagta
cgcttggaatggtttggcgacgaaatcgagcaaatcagagaatttgaccccacaactcag
cgttctgcccttgacaaaattgctcagatcgtgctgactcccactagctttacgccgatc
attttagatgcactgaaagatagtgctgagttccgaatgctgagtgctgagttaaatact
gaatcgtcacttgatcatcaagagtcagcaattctagaagggagtcgcagatttttaggg
ttggcttttgaaaaacctgcctcagtgctggattatctacctgaaaatactttaattgct
attgacgaaccagaacagtgccacgcccatagcgatcgctgggtggaaaatgctgaggaa
caatggtcgctggggactggggaattagatttgggtgctgtgcaattgccgaaaatccat
cggtcgtttgatgattgtctggcagaacttacccaatttctcactgtttatttatcagaa
atcgccgaagaaaacaacgggattaatttagcgagtcggtctgtacccgtcacaccgcac
caatttggtaaactggcggaaacactacgtcaagaacgcgatcgcaatttctctatctgg
ttaatttctgcccaaccttcccgttctgtctctttactccaagaacacgactgtccggcg
cagtttatccccaacccgcgcgactaccaagcaattgaaaagctacaaatcaaccatacc
ccggtcgccctaaaatattcgggtttggcggaactggaaggatttattctcccgacatac
cgcctagtaattatcaccgaccgcgaattttacggtcagcactccctcgccacaccagga
tatatccgcaaacgccgtaaggctgcttctaagcaagttgacccgaataaactgcgtccg
ggagattatgtcgttcacagaagccacggaattggtaaatttgtcaagctggaaagtttg
acatttaacgatgaaacccgtgactacatagttgtacagtacgccgatggtttgttgagg
gtggcggctgatcaagttggttctttgtcaaggttccgcaccacaggagataaagcccca
gaactgcacaaaatgaccgggaaggcttgggacaataccaagaaccgtgtccgcaaagct
atcaagaaattagcggtagacttgctgaaattatatgcggcgcgatcgcaacaacaaggt
tacgcctatcctcacgatatgccttggcaagaggaaatggaagattctttcccctaccaa
cccacaaccgaccagctaaaagccgtccaagatgtgaaacgggatatggaaagagatcgc
ccaatggatcgtttagtttgtggtgacgttggttttggtaaaaccgaagttgcaatccgc
gccatttttaaagctgtgacttctggtaaacaagtcgcactcttagcgccgacaactatt
cttacccagcaacattaccacaccctcaaagaacgctttgccccctatcctgtaaatgtc
ggcttactcaaccgcttccgcagtgctgaagaacgacgtactatacaaaaacgcttggca
acgggtgagttagatatcgtcgtggggacacaccaacttttaggtaaaagtgtcagtttc
aaagatttaggactgttggtcatagacgaagaacaacggtttggggtgaaccaaaaagag
aaaattaaatccttgaaaactcaggttgacgtgctgactctttccgccacacccattccc
cgtaccttgtatatgtctttatctgggattcgggaaatgagtttgattactacaccaccc
cccaccagacgaccaattaaaacccatctttcccccagaaatcctgaaagtgtccgcagc
gccattcgccaagaattagatcgagggggacaggtgttttacgtagttccacgggttgat
ggcatagaagagattacagccaatctccgggagatggtaccaggcgcgagatttgcgatc
gctcacgggcaaatggacgaaagcgagttagaatcaaccatgctcacctttagtaatggt
gacgcagacatcttggtatgtacgacaattattgaatctgggttagatattccccgcgtt
aacaccatcttaattgaagacgcacaccgttttggcttatcgcaactataccaattacgc
ggtcgtgtcggccgggcaggtattcaagctcatgcttggttattctatcccaagcagcgc
accttatctgatgctgcacggcagagattacgggcaatacaagaatttactcaactcggt
tccgggtatcaattggcaatgcgcgatatggaaatccgcggcgtgggtaacttgctaggt
gcagaacaatccggtcaaatggatgcgatcggttttgatttgtatatggaaatgttagaa
gaagcgattcgagaaattcgcggtcaagaaattccccaagttgacgatacacaaattgac
ctcaaccttaccgcatttgtccccgctgattatattcccgatattgatcaaaagatgagt
gcgtatcgtgcggtagcggcggcgaaatcccaagaagaactaacgcagattgcagccgaa
tggagcgatcgctatggtactttacccgtccccgccaatcaactgttacgcgtcatggaa
ctaaaacaattggcgaaaaaattaggatttagccggattaaaccagaaaacaaacaacac
gtaattttagaaaccccaatggaagaacctgcgtggaatttacttgcagccaacttacca
gaacatctcaaaacccgctttgtttactctcctggtaaagtcacagtccgcggtttagct
gtgatgaaagccgaccaacaactgcaaagcttgattgatgcaatggggagaatgcaaggt
gcgatcgccgaagcggttgttgtttga
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