Novosphingobium sp. THN1: C7W88_11240
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Entry
C7W88_11240 CDS
T05635
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C7W88_11240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_11240 (ligD)
Enzymes [BR:
not01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C7W88_11240 (ligD)
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C7W88_11240 (ligD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXU19482
UniProt:
A0A3B7DZX0
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All DBs
Position
2264633..2267158
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AA seq
841 aa
AA seq
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MAVRDPLAAYNAKRDFTRTGEPSGKKASSTTGNLFIVQKHDATRLHWDFRIEVDGVLKSW
AVTRGPSPDPEDKRLAVQTEDHPLSYAEFEGTIPQGEYGGGTVMLWDRGTWEPIEGKSAK
DLLDGHLHFRLAGERMKGEWLLIRLKKRGNEKRENWLLRKIDDAFAAQGDLLVERALTSV
LTGRTMAEIAADKRSSHSLKGKRGKDFTAEMQAAAKQNARMTKAQAPGKKRGAAPLPTFQ
PVQLATLVDSVPEGRQWLHEIKFDGYRALIAAKGKDVRVFTRSGLDWSEKFSPLIRHFAS
LDLPSCLIDGEITALDAEGNPDFSRLQAVLKRGHGEQGEGDALSFHAFDLLELDGEDLKP
LSNVERKQRLSGLLAEASPPIHVADHIIGGGEKLLEAMCRAGQEGIIAKRADAPYLPKRT
QNWLKVKCILRQEFIIVGMTKSSARRRPFASLLLAQREGDALVYKGKVGTGFNEELLDEL
AARFEPLRREDRALEVPKTEARGASWLEPVLVAEIAFAEFTSEGRVRHASFVGLREDKKA
EDVTPEKPVRIENPKEIISISNRSRVIFPESGQTKGDLADYYAQLAPAMLPFLANRPLSL
VRCPQGRAKQCFFQKHDSGSFGEHVHHVPIREKDGDSEDYLYVSDAAGILTCVQMGTIEF
HGWCARTDDVEAPDRMVIDLDPDEGLDFADVKRAAKDIRSRLSDLGLVSFAMLSGGKGVH
VVIPLRRDHSWQAHASFAERFAKALGMAEPERYVANMSKAKRKGRIFIDWLRNQRGSTAV
MPYSARARANAPVAAPIDWNELDDFEKASAFTISDAAALLKRSEGKLLRGWGVAEQSLPD
V
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccgtccgcgatcccctcgcagcttacaacgccaagcgcgatttcacccgcaccgga
gaaccttcgggcaagaaggcatcgagcacgacgggcaacctcttcatcgtccagaagcac
gacgccacgcggcttcattgggacttccgcatcgaggttgacggtgtgctgaaaagctgg
gcggtgacgcgcggacccagccctgatccggaagacaagcgccttgcggtgcagaccgag
gatcacccgctaagctacgccgagttcgaaggtaccattccccagggcgagtatggtggt
gggaccgtgatgctgtgggatcgcggaacctgggagccgatcgagggcaaaagcgccaag
gaccttttagacgggcatctgcactttcgtctcgctggggagagaatgaagggcgaatgg
ctgctcatccgcctgaagaagcggggcaacgagaagcgcgaaaactggttgctgcgcaag
attgatgacgcatttgccgcgcagggagatcttctcgtcgaacgtgctctcaccagcgtg
cttaccggccggaccatggccgagattgccgccgacaagcgctccagccattcgttgaag
gggaagcggggaaaagactttaccgccgagatgcaagcggcagccaagcaaaatgcgcgg
atgacgaaggcgcaggcaccaggcaagaaacgcggtgcagcaccactgccaacgtttcaa
cccgtccagcttgcaactctggtcgacagtgtccccgaagggcgccaatggcttcatgag
atcaagttcgacgggtatcgggcgctgatcgctgcaaagggcaaggacgtcagggtgttt
acccgcagtggcctcgattggtccgagaagttctctcccctgatccgccacttcgctagc
ctcgatctgccgtcatgcctgatcgatggcgagatcacggcattggacgccgagggcaac
ccggatttctcgcgcctgcaagccgtgctgaagcgaggccatggcgaacagggcgaaggc
gatgctctttccttccatgcgttcgatctccttgaactcgatggcgaggacctgaaacca
ctatccaatgtggagcgcaagcagcggctgtccggcctgttggccgaagcttctccgcca
atccatgtcgccgatcacatcattggtgggggtgagaagctgctggaggcaatgtgccgt
gccgggcaggagggcatcatcgccaagcgggccgatgcgccttatctgccaaagcggacg
cagaactggctgaaggtcaaatgcatcctgcgccaggaattcatcattgtcggcatgaca
aaatcgagtgcccgccgccgccccttcgcctcgcttctgctggcacagcgggaaggtgat
gcgctggtatacaagggcaaggtcggcacggggttcaatgaagaactgcttgacgaactg
gccgcccggtttgaaccgctgcggcgggaagaccgcgcactcgaagtgcccaagactgaa
gcccgtggtgcgtcatggctcgagcccgtgctcgtcgccgagatcgcttttgccgagttc
accagtgaaggaagagtccgccacgccagcttcgtcggtttgcgtgaagacaagaaggcc
gaggacgtgacgcccgagaaacctgtgcggatcgagaacccgaaggaaatcatcagcatc
agcaaccgttcgcgcgtgatctttcccgaaagcggtcagaccaagggtgatctggcagac
tactacgcacagcttgctccagcgatgctcccgtttcttgccaatcgcccgctaagcctc
gtgcggtgtccgcagggcagggcgaaacagtgctttttccagaagcatgatagcggctcg
ttcggcgaacatgtccatcatgtcccgatccgcgagaaggacggcgatagcgaagactat
ctctatgtcagcgatgctgcgggcattctcacgtgtgtccagatggggacgattgaattc
cacggttggtgcgcccggactgacgatgtcgaagcgccagaccgcatggtcatcgatctg
gaccctgacgaggggcttgattttgcggacgtgaaacgcgcagcgaaggatatccggtcg
cgcctgtccgatctcggtctggtaagctttgcgatgctttcgggtgggaagggcgtgcac
gtcgtcatccccctgcgccgggatcattcctggcaagcacacgccagctttgccgagcgt
tttgccaaggccttgggtatggcagagcctgagcgctacgttgccaacatgagcaaggcc
aagcgcaagggacgcatttttatcgactggttgcgcaaccagcgcggcagcaccgcagtc
atgccctattccgcccgcgcacgcgccaacgccccggttgcagcgccgatcgattggaac
gaacttgatgatttcgagaaggccagcgctttcaccatttccgatgcagccgccctgttg
aagcgcagcgagggcaaactgctgcggggatggggcgtggcagagcaatccttgcccgac
gtctag
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