KEGG   Novosphingobium sp. THN1: C7W88_11240
Entry
C7W88_11240       CDS       T05635                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
not  Novosphingobium sp. THN1
Pathway
not03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:not00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C7W88_11240 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:not03400]
    C7W88_11240 (ligD)
Enzymes [BR:not01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C7W88_11240 (ligD)
DNA repair and recombination proteins [BR:not03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C7W88_11240 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AXU19482
UniProt: A0A3B7DZX0
LinkDB
Position
2264633..2267158
AA seq 841 aa
MAVRDPLAAYNAKRDFTRTGEPSGKKASSTTGNLFIVQKHDATRLHWDFRIEVDGVLKSW
AVTRGPSPDPEDKRLAVQTEDHPLSYAEFEGTIPQGEYGGGTVMLWDRGTWEPIEGKSAK
DLLDGHLHFRLAGERMKGEWLLIRLKKRGNEKRENWLLRKIDDAFAAQGDLLVERALTSV
LTGRTMAEIAADKRSSHSLKGKRGKDFTAEMQAAAKQNARMTKAQAPGKKRGAAPLPTFQ
PVQLATLVDSVPEGRQWLHEIKFDGYRALIAAKGKDVRVFTRSGLDWSEKFSPLIRHFAS
LDLPSCLIDGEITALDAEGNPDFSRLQAVLKRGHGEQGEGDALSFHAFDLLELDGEDLKP
LSNVERKQRLSGLLAEASPPIHVADHIIGGGEKLLEAMCRAGQEGIIAKRADAPYLPKRT
QNWLKVKCILRQEFIIVGMTKSSARRRPFASLLLAQREGDALVYKGKVGTGFNEELLDEL
AARFEPLRREDRALEVPKTEARGASWLEPVLVAEIAFAEFTSEGRVRHASFVGLREDKKA
EDVTPEKPVRIENPKEIISISNRSRVIFPESGQTKGDLADYYAQLAPAMLPFLANRPLSL
VRCPQGRAKQCFFQKHDSGSFGEHVHHVPIREKDGDSEDYLYVSDAAGILTCVQMGTIEF
HGWCARTDDVEAPDRMVIDLDPDEGLDFADVKRAAKDIRSRLSDLGLVSFAMLSGGKGVH
VVIPLRRDHSWQAHASFAERFAKALGMAEPERYVANMSKAKRKGRIFIDWLRNQRGSTAV
MPYSARARANAPVAAPIDWNELDDFEKASAFTISDAAALLKRSEGKLLRGWGVAEQSLPD
V
NT seq 2526 nt   +upstreamnt  +downstreamnt
atggccgtccgcgatcccctcgcagcttacaacgccaagcgcgatttcacccgcaccgga
gaaccttcgggcaagaaggcatcgagcacgacgggcaacctcttcatcgtccagaagcac
gacgccacgcggcttcattgggacttccgcatcgaggttgacggtgtgctgaaaagctgg
gcggtgacgcgcggacccagccctgatccggaagacaagcgccttgcggtgcagaccgag
gatcacccgctaagctacgccgagttcgaaggtaccattccccagggcgagtatggtggt
gggaccgtgatgctgtgggatcgcggaacctgggagccgatcgagggcaaaagcgccaag
gaccttttagacgggcatctgcactttcgtctcgctggggagagaatgaagggcgaatgg
ctgctcatccgcctgaagaagcggggcaacgagaagcgcgaaaactggttgctgcgcaag
attgatgacgcatttgccgcgcagggagatcttctcgtcgaacgtgctctcaccagcgtg
cttaccggccggaccatggccgagattgccgccgacaagcgctccagccattcgttgaag
gggaagcggggaaaagactttaccgccgagatgcaagcggcagccaagcaaaatgcgcgg
atgacgaaggcgcaggcaccaggcaagaaacgcggtgcagcaccactgccaacgtttcaa
cccgtccagcttgcaactctggtcgacagtgtccccgaagggcgccaatggcttcatgag
atcaagttcgacgggtatcgggcgctgatcgctgcaaagggcaaggacgtcagggtgttt
acccgcagtggcctcgattggtccgagaagttctctcccctgatccgccacttcgctagc
ctcgatctgccgtcatgcctgatcgatggcgagatcacggcattggacgccgagggcaac
ccggatttctcgcgcctgcaagccgtgctgaagcgaggccatggcgaacagggcgaaggc
gatgctctttccttccatgcgttcgatctccttgaactcgatggcgaggacctgaaacca
ctatccaatgtggagcgcaagcagcggctgtccggcctgttggccgaagcttctccgcca
atccatgtcgccgatcacatcattggtgggggtgagaagctgctggaggcaatgtgccgt
gccgggcaggagggcatcatcgccaagcgggccgatgcgccttatctgccaaagcggacg
cagaactggctgaaggtcaaatgcatcctgcgccaggaattcatcattgtcggcatgaca
aaatcgagtgcccgccgccgccccttcgcctcgcttctgctggcacagcgggaaggtgat
gcgctggtatacaagggcaaggtcggcacggggttcaatgaagaactgcttgacgaactg
gccgcccggtttgaaccgctgcggcgggaagaccgcgcactcgaagtgcccaagactgaa
gcccgtggtgcgtcatggctcgagcccgtgctcgtcgccgagatcgcttttgccgagttc
accagtgaaggaagagtccgccacgccagcttcgtcggtttgcgtgaagacaagaaggcc
gaggacgtgacgcccgagaaacctgtgcggatcgagaacccgaaggaaatcatcagcatc
agcaaccgttcgcgcgtgatctttcccgaaagcggtcagaccaagggtgatctggcagac
tactacgcacagcttgctccagcgatgctcccgtttcttgccaatcgcccgctaagcctc
gtgcggtgtccgcagggcagggcgaaacagtgctttttccagaagcatgatagcggctcg
ttcggcgaacatgtccatcatgtcccgatccgcgagaaggacggcgatagcgaagactat
ctctatgtcagcgatgctgcgggcattctcacgtgtgtccagatggggacgattgaattc
cacggttggtgcgcccggactgacgatgtcgaagcgccagaccgcatggtcatcgatctg
gaccctgacgaggggcttgattttgcggacgtgaaacgcgcagcgaaggatatccggtcg
cgcctgtccgatctcggtctggtaagctttgcgatgctttcgggtgggaagggcgtgcac
gtcgtcatccccctgcgccgggatcattcctggcaagcacacgccagctttgccgagcgt
tttgccaaggccttgggtatggcagagcctgagcgctacgttgccaacatgagcaaggcc
aagcgcaagggacgcatttttatcgactggttgcgcaaccagcgcggcagcaccgcagtc
atgccctattccgcccgcgcacgcgccaacgccccggttgcagcgccgatcgattggaac
gaacttgatgatttcgagaaggccagcgctttcaccatttccgatgcagccgccctgttg
aagcgcagcgagggcaaactgctgcggggatggggcgtggcagagcaatccttgcccgac
gtctag

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