Nonomuraea phyllanthi: GBF35_18495
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Entry
GBF35_18495 CDS
T06257
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
now
Nonomuraea phyllanthi
Pathway
now03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
now00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GBF35_18495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
now03400
]
GBF35_18495
Enzymes [BR:
now01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GBF35_18495
DNA repair and recombination proteins [BR:
now03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GBF35_18495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QFY08397
LinkDB
All DBs
Position
complement(4041200..4042201)
Genome browser
AA seq
333 aa
AA seq
DB search
MARLPAYTPMLAQLGSLASVQGADWAVEMKWDGVRALAYVQEGTVRLMSRNNKDVTPAYP
ELQLMAGAAGGHAAVIDGEIVAFDEAGRPSFEQLQARMHQRNQAAIAQLTRSVPVTFMAF
DILHLDDDSTVSRSYLERRELLETTFTPGYRWEVPVWFADNAELALDSSRQLGLEGIMCK
RTRSPYRPGRRSSDWTKVKNVRTVEVVVGGWKPGGGRRSGMIGSLLLGAHDPRGRLRYVG
HVGTGFSEAVLRDLRERLAPLERPDPPFDEAVPREHLRDARWVEPCLVGEVQYAEVTGDG
RLRHPSWRGLRPDREPYEVTTAEILPDHGTATG
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggccaggctgcccgcctacacgccgatgctggcccagctcggctccctcgcctccgtc
cagggcgcggactgggccgtcgagatgaagtgggacggcgtgcgcgccctcgcctacgtg
caggagggcaccgtccgcctgatgtcgcgcaacaacaaggacgtcacccccgcctacccc
gagctccagctcatggcgggcgccgccggcgggcacgcggccgtgatcgacggggagatc
gtggccttcgacgaggcggggcggcccagcttcgagcagctgcaggcccggatgcaccag
cgcaaccaggcggcgatcgcgcagctgacccgatcggtgccggtgacgttcatggcgttc
gacatcctgcacctcgacgacgacagcaccgtctcccggtcgtacctcgaacgcagggag
ctgctggagaccaccttcacgcccggctaccggtgggaggtgccggtctggttcgccgac
aacgccgaactcgccctcgactcctccaggcagctggggctcgaagggatcatgtgcaag
cggacccgctccccctaccggccggggcggcgcagctccgactggacgaaggtcaagaac
gtgcgcaccgtcgaggtcgtggtcggcgggtggaagcccgggggcgggcggcgctcgggg
atgatcgggtcgctcctgctcggcgcccacgacccgcgcgggcggctgcggtacgtcggc
cacgtcggcaccggcttctccgaggccgtgctgcgcgacctgcgcgagcgcctggcgccg
ctggagcgccctgaccccccgttcgacgaggcggtgccgcgcgagcacctcagggacgcg
cgctgggtggagccgtgcctggtcggagaggtgcagtacgccgaggtcaccggcgacgga
cggctgcgccacccctcgtggcgcgggctgcggcccgaccgcgagccgtacgaggtcacc
acggcggagatcctccctgaccacggcaccgcgaccggctga
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