Nitrosopumilus oxyclinae: C5F49_06270
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Entry
C5F49_06270 CDS
T06689
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
nox
Nitrosopumilus oxyclinae
Pathway
nox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C5F49_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nox03400
]
C5F49_06270
DNA repair and recombination proteins [BR:
nox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C5F49_06270
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C5F49_06270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
P-loop_SecA
Met_synt_B12
AAA_25
HEM4
Motif
Other DBs
NCBI-ProteinID:
QLH04965
UniProt:
A0A7D5REJ2
LinkDB
All DBs
Position
complement(1082788..1084740)
Genome browser
AA seq
650 aa
AA seq
DB search
MEQISKFELASDYSPTGDQPQAIDALVKGVEKGTVQTLLGVTGSGKTFSVANVIARTGKN
TLVISHNKTLAAQLYSELKQFFPKNNVGYFVSYYDYYQPESYLPQTDTYIEKDTQINEKI
EKMRLEATAMLLSGEPTIIVSTVSCIYSLGNPKDWGDLAITLNIGDEIKRNEIIRRFVDA
RYERNDTEVAPGNFRVKGDTIDVTPAYSEDLVRISMFGDEIEKIALLDHVSLKEKKKVNQ
MKIYPAKHYLIAKDVRKKAVKSIRTELKQRLPELNELEKQRLEMRTKYDLEMIEELGYCS
GIENYSRHFDGRKAGEKAFCLMDFFGDDYLLVIDESHVTLPQLHGMFKGDHSRKNELITY
GFRLPSAFDNRPLKFEEFEEYIQNTIFVSATPSDYEKKISSHIAEQLVRPTGLLDPQVEI
RPSKDQMDDLIREINKRTAKSERVLVTTLTKRMAEDLAEYLSKKQVRVRYMHSEIEGLQR
TEIIRQLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNFTSLIQTCGRAARN
VNGTVIMYADNTTKSMKNAMDETTRRREKQIQYNKDHNITPKTIIKSVPDQEVALDDSKL
KSTHDLTTEVIDLDAQMKKYSEELDFERAIECRDRIKRLEKEIEFKNGRK
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
ttggaacagatatctaagtttgaattggcctctgattactctcctacaggggatcaacct
caagctattgatgcattagtcaaaggagtagagaaaggaactgttcaaacattacttgga
gttacaggtagtggaaaaaccttttctgtagcaaatgtaattgcaagaactggaaagaat
accttagtcatttctcataacaaaactcttgctgctcaactatactctgaactaaaacaa
ttttttccaaaaaataatgttggttattttgtatcttattatgactattatcaacctgaa
agctatcttccacaaactgatacctacatagaaaaagatactcaaattaatgaaaaaatt
gaaaagatgagattggaggcaactgcaatgttgttatctggcgaacctacaattattgta
tctacagtatcttgtatctactctcttggtaatcctaaagattggggagacttggctatt
acattaaacattggtgatgagattaaaagaaatgagataattcgaagatttgtagatgca
agatatgaaagaaatgatactgaagtagctcctggaaattttagagttaaaggtgataca
atagatgtaactcctgcatactctgaagatttagttagaatctctatgtttggggatgaa
atagaaaaaattgctttattagatcatgtttccttgaaagaaaaaaagaaagttaaccaa
atgaaaatttatcctgcaaaacattatcttattgcaaaagatgttcgtaaaaaggctgtc
aaatctattagaactgaattaaaacaacgattacctgaattaaacgaattagagaaacaa
agacttgagatgagaacaaaatatgatttagagatgattgaagagttagggtattgctct
ggaattgaaaattactctagacattttgatggacgaaaagctggagaaaaagcattttgt
ttaatggattttttcggcgatgattatcttttggtaattgatgaatctcatgtcacgtta
cctcaacttcatgggatgttcaagggtgatcattctaggaaaaatgaattgatcacatat
gggtttagattacctagtgcatttgataatcgaccactaaaatttgaagaatttgaagaa
tacatacaaaataccatttttgtttcagctactccttctgattatgagaaaaaaatttca
tctcacattgcagagcaactagtgaggcctactgggttacttgatcctcaagtagagatt
aggcctagcaaagaccagatggatgatttaattcgagaaattaacaaaaggactgctaaa
tctgagagggttttagtcactactttgactaaacgtatggctgaggatttggctgaatat
ctatcaaaaaaacaggttagggtgagatacatgcattcagagatagaaggattacagaga
actgagataatcaggcaattacgattaggggagtttgatgtacttgtggggattaatctt
ttacgtgagggtctggatattcccgaagtttctctagttgcaattttggatgctgacaag
gaaggatttttgaggaattttacaagtttaattcagacctgtggtagagctgcaagaaat
gtaaatggaactgtcatcatgtatgctgataataccaccaaatctatgaaaaatgcaatg
gatgaaactacacgtcgtagagaaaaacaaatacaatacaataaagatcataatattact
cctaaaacaattatcaagtcagtcccagatcaagaagttgcattagatgattctaaactc
aaatcaacacatgatcttactactgaagttatagatttggatgcacaaatgaaaaaatat
tctgaagaattagattttgaacgtgcaattgaatgcagagatagaataaaaagactagag
aaggagattgaatttaaaaatggtagaaaataa
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