Nocardia sp. CS682: DMB37_15885
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Entry
DMB37_15885 CDS
T06040
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DMB37_15885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noz03400
]
DMB37_15885 (mfd)
Enzymes [BR:
noz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DMB37_15885 (mfd)
DNA repair and recombination proteins [BR:
noz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DMB37_15885 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
AAA_22
UB2H
DUF3638
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBS41385
UniProt:
A0A4P7H4D6
LinkDB
All DBs
Position
complement(3514736..3518350)
Genome browser
AA seq
1204 aa
AA seq
DB search
MPTHRPPLAGLAAVAGADTALRTVTELVGKSSVELVGPSGVRPFVAATIAAKRPLVVVTA
TGREADDLTVELEEMLGPTVAQFPSWETLPHERLSPGADTVGRRLEVLRRLAHPEDPAFP
APLRVVVTTVRSLMQPMAGGLGDIEPIVLRVGAELDFDELLTRLVEFAYSRVDMVGKRGE
FAVRGGILDLFPPTADHPVRVEFWGDEVTELRPFAVADQRSLPEVSVEAVVAPPCRELLL
TDAVRARAAEVAAANAADAALVEMLEKLANGVPVDGMEALLPVLQPGELRLLTEVLPGNT
HLLLCDPEKIRTRAADLVRTGEEFLEASWTAASFGAAAPLGAHGLDLAASGYRALPVVHE
SADQHGLPWWTLSPLTAGVPEEVVLPVLAGPTARGSDELVATIFASLRAHVATGGRAVVV
VAGHGTAQRILERLADADVPAAALEPGAEPSNGVVGVLCGSLHDGLVFDDAGLVVVAESD
LTGNRMTAPGDGKRLPAKRRNQVDPLALNAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPGKRGQPGDRLFVPMESLDQLSRYVGGELPSLSKLGGSDWANTKRKARKAVREIA
GELVQLYAARQAAPGHAFGPDTPWQQEMEDAFAFTETVDQMTAIAEVKSDMEKPVPMDRV
VCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFPVTVKGLSR
FTDPADARAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVTAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDALESTVEGFWEREFDVL
VCTTIIETGLDISNANTLLVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITTEEPKEMRIDLPVDAHIPPDYIGSDRLRLEGYRKLASAQDDSTLASVVE
ELVDRYGPLPVEVGRLVSVAKLRLLAREYGVTEIAVTGTTLKVSPLQLPDSKQLRLKRIY
PSASYRAASGVISLPLPRVEDSVGAERVRDVVLLQFVADLLLALDGKAQGAVDLTTATEV
SAAR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccatcgcccaccgctggcgggactcgcggcggtcgccggtgccgacaccgcg
ttgcggaccgtcaccgagctggtcggcaagtcgtcggtcgagctggtcgggccgtccggg
gtgcgtccgttcgtggccgcgacgatcgcggcgaaacggccgctggtggtggtcaccgcg
accgggcgcgaggccgacgatctgaccgtcgagctcgaggagatgctcgggccgacggtc
gcgcagttcccgtcctgggaaactttgccgcacgagcggctctcacccggcgccgacacc
gtcgggcgcaggctcgaggtgctgcgcaggctggcccaccccgaggacccggccttcccc
gcgccgctgcgcgtggtggtcaccaccgtgcggtcgctgatgcagccgatggccggtgga
ctcggcgacatcgagccgatcgtgctgcgcgtcggggccgagctcgacttcgatgaactc
ctcacgcgcctggtcgaattcgcctacagccgggtcgacatggtcggcaagcgcggcgag
ttcgcggtgcgcggcggcatcctcgacctcttcccgccgaccgccgatcatccggtgcgc
gtggagttctggggcgacgaggtcaccgagctgcggccgttcgccgtcgccgaccagcgc
tcgctgcccgaggtgtcggttgaggccgtcgtcgcgccgccctgtcgcgaactgctgctc
accgacgccgtgcgcgcgcgggccgccgaggtcgccgccgccaacgcggccgacgccgcg
ctggtcgagatgctggagaagctggccaacggcgttccggtggacggcatggaggcgctg
cttccggtgttgcagcccggcgagttacgcctgctcaccgaggtattgcccggaaacacc
catctgctgctctgcgatccggagaagatccgcacccgcgccgccgacctggtgcgcacc
ggtgaggaattcctggaggcgtcctggaccgccgcctccttcggcgccgccgctccgctc
ggcgcacacggactggacctggccgcctccggctatcgggcgctgccggtcgtgcacgag
agcgccgaccagcacggcctgccctggtggacgctgagcccgctcactgcgggcgtcccc
gaagaggtggtgctgccggtgctggccgggccgaccgcccgcggctccgacgaactcgtc
gcgaccatcttcgcctcgctgcgcgcgcacgtggccaccggcggccgcgccgtggtcgtc
gtcgccggacacggtacggcgcaacgcattctggaacgcctcgccgacgccgacgtgccc
gccgccgcgctggaacccggcgccgaaccgagcaacggcgtggtcggcgtgctgtgcggt
tcgctgcacgacgggctggtcttcgacgacgccgggctcgtcgtcgtcgccgaatccgat
ctcaccggcaaccggatgaccgcgcccggcgacggcaaacgcctgcccgccaagcgccgc
aaccaggtcgacccgctggcgttgaacgcgggcgacatggtggtgcacgatcagcacggc
atcgggcgattcgtcgagatgatcgagcgcaccgtcggcggcgcccgccgggaatacctg
gtcatcgagtacgcgcccggcaagcgcggccagccgggcgaccggttgttcgtgccgatg
gagtcgctggatcagctgtcgcgctacgtcggcggcgagctgcccagcctgtccaagctc
ggcgggtcggactgggccaacacgaaacgcaaggcgcgcaaggcggttcgcgagatcgcc
ggcgagctggtgcagctgtatgccgcgcgtcaggcggcgccggggcatgcgttcggcccc
gatacgccgtggcagcaggagatggaggacgcgttcgcgttcaccgagaccgtcgaccag
atgaccgccatcgccgaggtgaagtcggacatggagaagccggttccgatggaccgggtg
gtatgtggcgacgtcggttacggcaagaccgagatcgccgtgcgcgcggcgttcaaggcg
gtgcaggacggcaagcaggtcgtcgtgctggtgccgacaacgctactggcgcaacaacat
ctgcagaccttcaccgaacgggtcgcgggcttcccggtgaccgtgaagggcctgtcccga
ttcaccgatccggccgacgcccgcgccgtgctggagggcatggccgacggcagcgtcgac
atcgtggtcggcacccaccgcctgctgcagaccggcgtgcgctggaaggatctcgggctc
gtcgtggtcgacgaggagcagcgcttcggtgtcgaacacaaggaacacatcaaggcgctg
cgcacccacgtcgacgtgctgaccatgtccgcaacgccgatcccgcgcaccctggagatg
agcctggccggcatccgcgagatgtcgaccatcctcaccccgccggaggagcggcatccg
gtgctcacctacgtcggcgcctacaacgacaagcaggtcaccgccgccatccggcgcgag
ctgctgcgcgacggccaggtcttctacgtgcacaaccgggtgtcctcgatcgacaaggcc
gccaagcggattcgcgatctggtgcccgaggccagggtggccgtcgcgcacggtcagatg
aacgaggacgccctcgagtccaccgtggaggggttctgggagcgcgaattcgacgtgctg
gtctgcaccacgatcatcgagaccggcctcgacatctccaacgccaacacgctgctggtg
gaacgcgctgacgccctcggtctttcgcagttgcaccagctgcgtggccgggtcgggcgc
agccgggaacgcgggtacgcctacttcctgtacccgccggagaagccgctcaccgagacc
gcctacgaccgcctcgccaccatcgcgcagaactccgacctcggggcgggcatggccgtg
gcgatgaaggacctcgaaatccgcggcgccggtaacgtgctcggtgccgagcagtccggg
cacgtcgcgggcgtcggcttcgacctctacgtccggctggtcggcgaggccgtcgaggcc
taccgggccgccgccgacggcaggcccatcaccaccgaggaacccaaggaaatgcgcatc
gacctgcccgtcgacgcgcacatcccgcccgactacatcggcagcgaccggctccggctc
gagggataccgcaaactggcctccgcgcaggacgattcgaccctcgcctcggtggtcgag
gagctcgtcgaccgatacggcccgctgccggtcgaggtcggccgcctggtctcggtggcc
aagctccggctgctggcccgcgagtacggagtcactgaaatcgcggtcaccggaacaaca
ctcaaggtctcgccgctgcaactgccggactcgaagcagctgcgcctcaagcggatctac
cccagcgccagttaccgcgcggccagcggggtcatctcgctgccgctgccgcgcgtcgaa
gacagtgtcggagcggagcgggtccgcgacgtggtgctcctgcaattcgtcgccgaccta
ctgctggcattggacggaaaggcgcagggcgcagtagatctcaccaccgcgaccgaggtc
tcggccgcccgatga
DBGET
integrated database retrieval system
