KEGG   Neofusicoccum parvum: UCRNP2_4126
Entry
UCRNP2_4126       CDS       T03126                                 
Name
(GenBank) putative nuclear matrix protein
  KO
K12878  THO complex subunit 1
Organism
npa  Neofusicoccum parvum
Pathway
npa03013  Nucleocytoplasmic transport
npa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UCRNP2_4126
  09122 Translation
   03013 Nucleocytoplasmic transport
    UCRNP2_4126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npa03019]
    UCRNP2_4126
   03041 Spliceosome [BR:npa03041]
    UCRNP2_4126
Messenger RNA biogenesis [BR:npa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     UCRNP2_4126
Spliceosome [BR:npa03041]
 Complex C
  Other components
   EJC/TREX
    UCRNP2_4126
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    UCRNP2_4126
SSDB
Motif
Pfam: efThoc1 Pur_ac_phosph_N
Other DBs
NCBI-ProteinID: EOD49114
UniProt: R1GSU4
LinkDB
Position
Unknown
AA seq 366 aa
MEVDVDPKPEVPSITTEGAAVDEETKPEQKKDSKVLDTDTLYPVFWTLQQAFSNPPKLFT
GEYLSEFKTGIEHTIAKFKDVPKVIPAKKQDKTDDKDGPKNEGRPEGKPEGKHGNADAED
VHGVKRKHDDGEEEFASPYNPKYLTSRDLFELELSDLAFQRHILVQALVLLDFLLSLTEK
SKEKTQKWLSTVGNPNRAVQYGYTLSAADADWASKTRTAITAYLQLLPDGKFYYRMVDTG
LKDSERYTIPTAESLHRGIQGDELDLEMAMTDEDKHNLQEAKASKTWRALRIASKDRLSL
FDKIDDGKQLEALFEPEGGDDAGKDERATTEAAESRVDGSVAEAASQAHVQEEQRAEQQG
SQVTAR
NT seq 1101 nt   +upstreamnt  +downstreamnt
atggaagttgacgtggaccctaagccggaagtaccatcgatcacgaccgaaggtgcggca
gtggacgaagagaccaagccggagcagaagaaagacagcaaagtattggatactgacacg
ctgtaccctgtgttctggaccttgcaacaagctttctccaatccaccaaagctgttcacc
ggcgagtatctcagcgagttcaagaccggaattgagcatactattgcaaagttcaaggat
gtccccaaagttatcccagctaagaagcaggacaagaccgacgataaggacgggcccaag
aacgaaggcaggcccgagggcaagcccgagggaaagcacggcaatgccgatgccgaggat
gtacatggtgtgaaacggaaacatgacgacggagaagaagagttcgccagcccgtacaac
ccgaagtacttgacaagcagagacctattcgagctagagctcagcgatctggcgttccag
aggcatatcctggtccaggcactggtcctccttgactttctactctcgttgacggaaaag
tccaaggaaaagacgcaaaaatggctatcgacagtgggcaacccgaaccgagccgttcaa
tacggttacactctaagtgctgcagatgccgactgggcgtcaaagaccaggacagcgatc
acagcgtacctacagcttctaccagacggcaaattctattaccggatggtggacacggga
ttgaaggattctgagaggtacactatccccacggccgagtcgctgcacagagggatccaa
ggggacgaattagatctggagatggccatgacggacgaggataagcacaacttgcaggag
gctaaagcaagcaaaacgtggagggcactccgcattgcatccaaggacaggctaagctta
ttcgacaagatcgacgacggcaaacagctcgaggcgctgttcgagcctgagggcggcgac
gatgcgggcaaagacgagcgggcaacgacggaggcggcggagagcagggttgacgggtcc
gtggcggaagcggcatcgcaggcgcatgtgcaggaggaacaacgggccgagcagcaaggc
agtcaagtgacggcgcggtga

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