Neofusicoccum parvum: UCRNP2_7417
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Entry
UCRNP2_7417 CDS
T03126
Name
(GenBank) putative dna ligase 4 protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
npa
Neofusicoccum parvum
Pathway
npa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UCRNP2_7417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npa03400
]
UCRNP2_7417
Enzymes [BR:
npa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UCRNP2_7417
DNA repair and recombination proteins [BR:
npa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
UCRNP2_7417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
SWIRM-assoc_2
Motif
Other DBs
NCBI-ProteinID:
EOD45866
UniProt:
R1GCB1
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MAGASVMQSQEAVDEEKRQYGHGSMTEEELDEKYPNRPHNHSKTLPFHTLYLDLFNPLND
NKKKPTGPPTARRRQGPHGQAHMTPNEIRRNIIERFISRWRQEVGSDIYPAFRLIVPEKD
RDRAMYGLKEKAIGKLLVRVLRIDKDSEDGFNLLNWKLPGQKATVAMAGDFAGRCFDVIS
KRPILTKPGNMTIAEVNERLDKLSVVSKEEDQLPIFQEFYQRMNAEEMMWLIRVILRQMK
VGATERTIFSIWHPDAESLFNVSSSLRRVCWELYDPSIRLDGDETGVNLMQCFQPQLAAF
QMHSFEKMVQRMKPTEDDDEFWIEEKLDGERMQLHMIEDESVPGGKRFGFWSRKAKDYTY
LYGSSFEDDDSALTRHLKEAFHSGVRNIILDGEMITWDMEQDAMVPFGTLKTAALSEQKN
PYSTGQRPLYKIFDLLYLNDEPLTKYTLRDRRKALDTSIHPVHRRFEIHTYTTANSPGEI
EPLLRKVVSEASEGLVIKNPRSMYRLNQRNDDWIKVKPEYMTEFGEELDCVIVGGYYGSG
HRGGRLSSFLCGLRVDQNQIERGANPMKCFSFFKVGGGMTAADYAAIRHNTNDKWQKWDP
KRPPTEYIELAGGDRQYERPDVWIKPCDSVVVSVKAASVGTTEQFRMGMTLRFPRFKKLR
ADKSWKDALSIQDFLTLKSNAEQAHAEKEFKVDDGRRKRQRTTRKRPMTVAGFDDASRSP
TAADDASSRPQVFAGLTFYIMTDALAPKTPKPDLEALVKAHGGRLVHSPTAAPHVVCVAD
RRLVPVASLVKKNERSVVRPAWLLDCVAQAAADAALGRATDDGVPPLLLPYEGRRHLFHA
TDDDAVQADGAVDAWGDSFARDVASGAELKRDVLDRMAVPPVKAEEENDDVVVGARFLDQ
MEERDVPLFGDGEVSGWLFRGARVWFDDDDDDDDDDAGSPAAAATRLYLAAQVVRFAGGA
VAAGLGEEGVTQVVVAPGVRKERLREIREAVAAKGGPVPRVVSVEWVEESWKERTLLDEE
RFVAL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcctccgtgatgcagagccaggaggccgttgacgaggagaagcgccagtac
ggccacggctccatgaccgaggaagagctggacgagaagtatcccaatcgcccgcacaac
cactcgaagacactgccctttcacactctctacctcgacctcttcaatcccctcaatgac
aacaagaagaagcccaccggcccgcccactgcccgcaggagacagggcccccatggccag
gctcacatgactcccaatgaaatccgccgcaacatcatcgaacgcttcatctcgagatgg
cgccaggaggtcggcagcgacatctacccggccttccgcctgatcgtccccgagaaggac
cgcgatcgcgccatgtacggcctcaaggagaaggccattggcaagctacttgtacgcgtt
ctccgtatcgacaaggactcggaggacggcttcaacctgctcaactggaagcttcccggc
cagaaagccaccgtggccatggctggcgactttgctggcaggtgctttgacgtcatttcc
aagcggcccattctgaccaagccgggaaacatgaccatcgctgaagtgaacgaacgactg
gacaagctctctgtcgtctccaaggaggaggaccagcttcctatcttccaggagttctac
cagcgcatgaatgcagaggagatgatgtggctgatccgcgtcattctccgccaaatgaaa
gtgggagccaccgagaggactattttcagcatctggcaccccgatgctgagagtctgttc
aacgtttcatccagcttacgcagagtgtgctgggagctgtacgatccatccatccgctta
gatggggacgagaccggggtgaatctcatgcagtgcttccagccgcagctggcagccttc
cagatgcattcgttcgagaaaatggtccaacgaatgaagccaacagaagatgacgacgaa
ttttggatcgaggaaaagctcgacggcgagcgcatgcaactgcacatgattgaggatgaa
agtgtgcctggcggcaagcgctttggattctggtcccgcaaagccaaagactacacctac
ctgtacgggagcagctttgaggatgatgatagcgccctcacgcgacatctgaaggaggct
ttccatagcggagtgcgcaacatcatactcgacggcgagatgatcacttgggatatggaa
caagacgccatggtcccgttcggcacactgaagacagctgcgctctctgagcaaaagaat
ccttactcaactggccaacgccctctctacaagatttttgatctcctctaccttaatgat
gaaccccttactaagtacacgctccgtgaccgcagaaaggcgctggataccagtatccac
cccgtccaccgccggtttgagattcacacatacaccacagccaacagcccaggggaaatc
gagccgctccttcgcaaagtcgtatccgaagcgtccgaaggcttggtcatcaagaaccca
cgctccatgtaccggctgaaccagcgcaacgacgactggatcaaagtcaagcccgagtac
atgaccgagttcggcgaggagctcgactgcgtgatcgtcggaggctactacggatccggg
caccggggcgggcggctttccagcttcctgtgcgggctgcgcgtcgaccagaaccagatc
gagcgcggcgcgaacccgatgaagtgcttctcgttcttcaaggtcggcggcggcatgacg
gcggcggactatgcagccatccggcacaacacgaacgacaagtggcagaaatgggacccc
aagcggccgccgaccgagtacatcgagctcgccggcggcgacaggcagtacgagcggccg
gacgtgtggatcaagccgtgcgactcggtcgtcgtgtccgtcaaggcggcatccgtcggg
acgaccgagcagttccgcatgggcatgacgctgcgcttcccgcgcttcaagaagctccgc
gccgacaagagctggaaagacgcactctcgatccaagacttcctgacgctcaagagcaac
gcggagcaggcccacgcggagaaggagttcaaagtcgatgacgggcggcgcaagcggcag
cgcaccacgcgcaaacgccccatgacggtcgccggcttcgacgacgccagccgctccccc
accgccgccgacgacgcctcctcccgcccccaggtcttcgccggcctgaccttctacatc
atgacggacgcgctcgcccccaaaacgcccaagcccgacctcgaagccctggtcaaggcg
cacggcgggcgcctcgtgcactcccccacggccgcgccccacgtcgtgtgcgtcgccgac
cggcgcctcgtgccggtcgcgtcgctggtcaagaagaacgagcgctccgtcgtgcgcccg
gcctggctgctcgactgcgtcgcgcaggcggccgccgacgccgcgctggggcgggcgacc
gacgacggcgtgccgccgctgctgctgccctacgagggccgccgccacctcttccacgcc
accgacgacgacgccgtgcaagccgacggcgccgtcgacgcctggggcgacagcttcgcc
cgcgacgtcgcgtccggcgccgagctgaagcgcgacgtcctggatcggatggccgtgccg
ccggtcaaggcggaggaggagaacgacgacgtcgtcgtcggcgcgaggtttttggaccag
atggaggagcgcgatgtgccgctgttcggcgacggcgaggtcagcgggtggctgttcagg
ggggcgagggtgtggttcgacgacgacgacgacgacgacgacgacgacgcgggctcgccg
gcggcagcggcgacgaggctgtatctcgcggcgcaggtggtgcggtttgcgggaggggcg
gtggcggcggggttgggggaggagggcgtgacgcaggtcgttgtggcgccgggggtgagg
aaggagaggttgcgggagatcagggaggcggtggcggcgaagggcgggccggtgccgagg
gtggtgagtgtagaatgggtggaggagagctggaaggagaggaccctgttggatgaggag
aggtttgttgcgttgtga
DBGET
integrated database retrieval system
