Nocardioides panacisoli: KUV85_00525
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Entry
KUV85_00525 CDS
T08184
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUV85_00525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npc03400
]
KUV85_00525 (mfd)
Enzymes [BR:
npc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUV85_00525 (mfd)
DNA repair and recombination proteins [BR:
npc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KUV85_00525 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYJ04198
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All DBs
Position
99352..102909
Genome browser
AA seq
1185 aa
AA seq
DB search
MTLAGLADAVLADPDLSAALTEAAGGAVTARELTGPESLRPFVAAGLARAGRPVLAVTAT
TREAEQLLAELEDQVDPATVGYYPSWETLPHERLSPRSDTVGRRLAVLRRLCHPGPSTGS
TGPLSVVVAPVRSLLQPQVKGLGDLTPVELAVGDSVDLDDVVAGLLDAAYTRVDLVERRG
EFAVRGGIVDVFPPTEEHPLRVEFFGDDVEEIRSFAVADQRTIDALDRVWAPPCRELLLT
DDVRRRAAELGRAHPELVEITDKLAEGIAVEGMEALIPALVDELELLVDLMPPDTQVVVL
DPERARARAHDLVATSEEFLGASWAAAASGGDAPIDLQAASYRTLADVRTHALDRGQSWW
TLSPFGLAGDAAEAEPSLDAAADATDPSTGFTPAPNYRGDVERAFGEIAKWRAEGWTVAV
VHPGHGPAERMVEALGERDVPARLVEDLPAGTVPGPDVVTVVQGTLTHGLVDEGRRLAIL
TGEDVLGQKAATRDKGAMPTRRKKQIDPLELKAGDYVVHEQHGVGRFVEMRQREVQGATR
EYLVIEYGASKRGQPADRLMVPADTLDQITRYVGGEQPSLDRLGGGDWTKRKNRARKAVR
EIAAELIKLYAARQATRGHAFGPDSPWQHELEDAFPFHETPDQLTTVDEVKRDMQRVVPM
DRLVCGDVGYGKTEIAVRAAFKAIQEGKQVAVLVPTTLLVGQHLATFTERMAGFPVTIKG
LSRFQTESEAQAVLAGLTDGSVDLVVGTHRLLNPETRFKDLGLIIVDEEQRFGVEHKEQM
KRLRTSVDVLAMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGAYEDRQVVAAC
RRELLRDGQVFYIHNRVSSIEKAAARLRELMPEARVATAHGQMGEAQLEQVMVDFWEKRF
DVLVCTTIVESGLDVSNANTMVIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPEKPL
TETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEA
VRDFRDDAPEQLEEVRVELPVDAHLPHDYVPSERLRLEMYKRLSEVREDADVDQLSEEMT
DRYGEQPEPVAALLLVARFRARARQAGLKEISTVGKNVRFAPVVLPDSRTVRLQRLHPKA
LAKPQTETVLVPRPPTPGKVGRPLEGIALLEWARGVIDAIIDPKE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttgccggcctcgccgacgccgtcctcgccgacccggacctgtccgctgccctg
accgaggccgccggcggcgccgtgaccgcccgcgagctcaccggtcccgagtcgctgcgg
ccgttcgtcgccgccggcctggcccgtgcggggcgcccggtgctcgccgtcaccgccacg
acccgtgaggccgagcagctcctcgccgagctcgaggaccaggtggaccccgccaccgtc
ggctactacccgagctgggagaccctgccgcacgagcggctcagcccgcgcagcgacact
gtcggccgtcgcctggcggtgctgcggcgcctgtgccaccccgggccctcgacgggctcg
accggcccgctgtcggtcgtggtcgcaccagtgcgatcgctgctgcagccgcaggtgaag
ggcctgggtgacctcacgccggtcgagctcgccgtgggcgactcggtggacctcgacgac
gtcgtggccggcctgctcgacgcggcgtacacccgcgtcgacctggtggagcgccgtggc
gagttcgccgtccgtggcggcatcgtcgacgtcttcccgccgaccgaggagcacccgctg
cgcgtggagttcttcggcgacgacgtcgaggagatccggtccttcgccgtggccgaccag
cgcaccatcgacgcgctggaccgcgtttgggcaccgccgtgccgggagctgctgctcacc
gacgacgtacgccggcgggccgcggagctgggacgggcccaccccgagctggtcgagatc
accgacaagctcgccgagggcatcgccgtcgagggcatggaggccctcatcccggcgctg
gtcgacgagctcgagctgctggtggacctgatgcccccggacacccaggtcgtcgtcctc
gaccccgagcgcgcccgcgcccgtgcccacgacctcgtcgccaccagcgaggagttcctc
ggtgcctcgtgggcggccgcggccagcggcggcgacgcaccgatcgacctgcaggcggcg
tcgtaccgcacgctcgccgacgtccgcacccacgcgctggaccgcggtcagtcgtggtgg
acgctcagcccgttcgggctggccggcgacgccgcggaggcagagccctccctcgacgcc
gcggcggacgccacggatcccagcaccggcttcacgccggcgcccaactaccgcggtgac
gtcgagcgggccttcggcgagatcgccaagtggcgcgcggagggctggaccgtcgcggtg
gtccaccccggccacggcccggcggagcgcatggtcgaggcgctgggggagcgcgacgtc
cccgcccggctcgtcgaggacctcccggccggcacggtgcccggaccggacgtcgtcacc
gtcgtgcagggcaccctcacccacggcctggtcgacgagggccgccggctggcgatcctc
accggcgaggacgtgctgggtcagaaggccgcgacccgcgacaagggcgccatgcccacc
cgccgcaagaagcagatcgacccgctggagctcaaggccggcgactacgtcgtccacgag
cagcacggcgtcggccgcttcgtggagatgcgccaacgcgaggtgcagggagccacccgc
gagtacctcgtcatcgagtacggcgcctccaagcgcgggcagccggcggaccggctgatg
gtgcccgccgacaccctggaccagatcacccgctacgtcggcggcgagcagccgagcctg
gaccgcctgggcggcggcgactggaccaagcgcaagaaccgcgcccgcaaggccgtccgg
gagatcgccgccgagctgatcaagctctacgccgcccgacaggccacccgcggccacgcc
ttcggccccgacagcccgtggcagcacgagctcgaggacgccttccccttccacgagacc
cccgaccaactgacgaccgtcgacgaggtcaagcgcgacatgcagcgcgtcgtccccatg
gaccgactggtgtgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggcg
ttcaaggccatccaggagggcaagcaggtggccgtgctggtcccgaccacgctgctggtc
ggccagcacctggcgaccttcaccgagcggatggccggcttccccgtcaccatcaagggg
ctcagccgcttccagaccgagtccgaggcgcaggccgtgctcgcggggctcaccgacggc
agtgtcgacctcgtcgtcggcacgcaccggctgctcaaccccgagacccggttcaaggac
ctcggcctgatcatcgtcgacgaggagcagcgcttcggtgtcgagcacaaggagcagatg
aagcgcctgcgcacctcggtggacgtgctcgcgatgagcgcgacgccgatcccgcggacg
ctggagatggccatcaccggtatccgggagatgtcgaccatcaccacgccgcccgaggag
cggcacccggtgctgacctacgtcggcgcctacgaggaccgccaggtcgtcgccgcctgc
cgccgcgagctgctgcgcgacggccaggtcttctacatccacaaccgcgtcagctccatc
gagaaggccgcggcgcggctgcgcgagctcatgcccgaggcccgcgtcgcgaccgcgcac
ggccagatgggggaggcccagctcgagcaggtgatggtcgacttctgggagaagcgcttc
gacgtgctggtgtgcaccaccatcgtcgagtcgggcctggacgtctccaacgccaacacc
atggtcatcgagcgggccgacaccctcgggctctcgcagctgcaccagctgcgtgggcgg
gtcggccgctcccgcgagcgcgcctacgcctatttcctctacccgccggagaagccgctc
accgagaccgcgcacgagcggctggccacgctggcgcagcactccgacctcggcggtggc
atggcgatcgcgatgaaggacctggagatccgcggcgccggcaacctgctgggcggggag
cagtcgggccacatcgccgacgtcggcttcgacctctacgtccgcctcgtcggcgaggcc
gtgcgggacttccgcgacgacgcaccggagcagctggaggaggtccgcgtcgagctcccg
gtcgacgcccacctgccgcacgactacgtgcccagcgagcgcctgcggctggagatgtac
aagcggctctctgaggtccgcgaggacgccgacgtcgaccagctcagcgaggagatgacc
gaccgctacggcgagcagcccgagccggtcgccgcgctgctgctggtcgcccggttccgt
gcccgggcccggcaggcggggctgaaggagatcagcaccgtcggcaagaacgtgcgcttc
gcgccggtcgtgctgcccgactcccgcaccgtccggctccagcggctccaccccaaggcg
ctcgccaagccgcagaccgagaccgtgctggtgccgcgtccgcccacgccgggcaaggtg
gggcgtccgctggagggcatcgccctgcttgaatgggcccgtggtgtgatcgacgccatc
atcgaccccaaggagtga
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