Nocardioides panacisoli: KUV85_08745
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Entry
KUV85_08745 CDS
T08184
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KUV85_08745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npc03400
]
KUV85_08745 (ligD)
Enzymes [BR:
npc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KUV85_08745 (ligD)
DNA repair and recombination proteins [BR:
npc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KUV85_08745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QYJ05751
LinkDB
All DBs
Position
complement(1779378..1780307)
Genome browser
AA seq
309 aa
AA seq
DB search
MRPMLATPGDRVPSGESWRHEVKWDGVRALVSVRDGAVRLHSRNGNDVSEAWPELRTPPA
AVSEAVLDGEIIALNDHGIPDFRTLAERIHVRRQSTVARLAARVPATLMVFDLLDLDGTD
LTARPWSERRARLEELDLEPSGWQVPPTYDDGAMLHEATRAQGLEGIVSKRTDARYRPGE
RTRHWLKFAHRHRGSYVVGGWRPQTGTRARLAALLVGEPTAEGLAYRGRVGSGIGPAQAR
QLTDLVGELSREESPFSDEVPRVDADGTHWLAPVLVVDVDSHGTGHDRLRQPSFRGVRDD
LAPEDLLDG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgatgctcgccacccccggtgaccgcgtgccgtcgggggagtcgtggcgccac
gaggtcaagtgggacggcgtccgcgcgctggtgagcgtgcgggacggcgcggtgcgcctg
cacagccgcaacggcaatgacgtctccgaggcctggccggagctgcgtacgccgccggcc
gccgtgtcggaggcggtcctcgacggcgagatcatcgcgctcaacgaccacgggatcccg
gacttccgcacgctcgcggagcggatccacgtgcgtcggcagtcgaccgtggcgcgcctg
gccgcacgcgtgccggcgaccctgatggtcttcgacctgctcgatctcgacggcaccgac
ctgaccgcgcgaccgtggtcggagcgtcgtgcgcggctggaggagctggacctcgagccc
tcgggctggcaggtgccgccgacgtacgacgacggcgccatgctgcacgaggcgacgcgc
gcgcagggactcgagggcatcgtgtccaagcggaccgacgcgcgctaccggcccggtgag
cgcacgcggcactggctcaagttcgcccaccgccaccgcggctcctacgtcgtgggcggg
tggcgcccccagacggggacccgggcccgcctggcggcgctgctggtgggtgagcccacc
gcggagggcctcgcctaccggggccgggtcggcagtggcatcggcccggcgcaggcgcgg
cagctcaccgacctggtgggcgagctgtcccgggaggagagcccgttcagcgacgaggtg
ccccgcgtcgacgccgacggcacgcactggctcgcgccggtgctggtggtcgacgtcgac
agccacggcaccggccacgaccgactgcgccagccctccttccgcggcgtgcgcgacgac
ctggcccccgaggacctgctcgatggctga
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