Nothoprocta perdicaria (Chilean tinamou): 112944129
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Entry
112944129 CDS
T07556
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
npd03036
]
112944129 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
npd03400
]
112944129 (SMCHD1)
Chromosome and associated proteins [BR:
npd03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112944129 (SMCHD1)
DNA repair and recombination proteins [BR:
npd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112944129 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112944129
NCBI-ProteinID:
XP_025891289
Ensembl:
ENSNPEG00000013263
LinkDB
All DBs
Position
Unknown
AA seq
2001 aa
AA seq
DB search
MGHGPPGVSLQWRGAPPSTRTSQAMSLAFGIASDEKFVITTTNRKEITEDNFSELVQGGV
TLYLLQTVDQTLLSATKERIDFLPHYDTLVKSGIYEYYASEGQNPLPFALAELIDNSLSA
TSRNTGIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDH
SGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHEFVLSKEDFEKK
EKNKEAIYSGFIRNRKPSDSTHITSDDERFLHNLILEERDKESFTAVIITGVQPDHMQYL
KNYFHLWTRQLAHIYHYYIHGPKGNETNATVKDVGPFNNIDIQISLFEKGKVPKIVNLRE
IKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDND
DDDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCTPPKKRGLAPIECYNRISGALF
TNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQI
KFTVYKGITTRTDLLSKRMQSPWTVYSAIEWDGKTYKTGQLVKTIKTLPIFYGTIENFFL
YGDHDGDIFATGGEVQIALEPQALYAERKTIPISKLDRTVSEKAVKKYIEDEMARLPDRL
SVTWPEGDELLPNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVVLH
SPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKI
FKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDFKPILEASGLTLR
YEEITKGTNCIIKGVTAKGCINSYQGKNFNLKVTLPGLKEDTQICKIRLQPGPPRQLKVK
PDSEVLKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFIGASNLPVYAVDCSNAGTNIL
TGPAIQVQNIKKDQILKAKIEIPSCKDVPPVEKMIKLLPSSHVARLQILSMDGQKAIQIK
HQDEINWLAGDVMHNLIFQMYDEGEREIHITPALAEKIKVNWTPKINRDNLIQGLLPDVK
IPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQMGEELQSEIDV
MITDQYGNQVQTVTSSCINSLGVSGPGLDKSNLKISWQESTLTMRIKGIRFKPCLPGSKE
LCFAWREFSDFLRVNLIAGSPAKLQLVDWPDLDKPIAVINGRELQKPLVVQLCDQWGNPS
PEPNVKISLMKSNNLKIVLSNQQHKTDENGRANLGIIGIHAPRGEHTLQLKASYNKTILD
CPVITLNVLLDPEKPVQLNVKYDKNASFPAGGTFPDFMVSVLSEDSNIIKNINPARITMK
MWEGLGCGTRMAIDSFQVTTFSCSKVKDDKEDGFFYFRDKVIPERVGNYNIQFTFAMDKT
NMLNSDQIVVEVVPNEPVRLSPDSLPATPAVSNVRAVTSRTLVKDLHLHVVDEYNNRTGI
DLVGRIIAKIKSPNDEDTEIPQFQGKVSTVEFPFDRGSAEINLVLAENSPGRDSSEYILV
FEPDLPTLEKSLEPYHLSFMFYNDFKKQQQMATLTRERDQLSQSIGVYRNWFDTTNQLVT
EMKCQAKEAETRETHLKNELRKHQIDLPQTNVLQYVDSLIKQKMMDQEGVMKQPRRTCTL
PNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQ
VLPLDSIYKKTLPDWNRPLPHLRNGRICFRPVGNPVFARDLLTFPDNAEHCQTVFGMLLG
DTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFG
APMPKLYSTLSGQIDLLQQYRTAVVKLDNANKDLESQLRSLNTPEMQKKKQELAEQEKNL
KLIEQKLGMTPSDKVTETFLQPVMLEMCDTPIPPKRMRRDTLKKLYGAEEWISSPGKKQQ
QQQPLQIPTSELNGTPRKRKA
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atgggccacggtcctccaggggtgtccttgcagtggcgtggagcacctccctccacgaga
acatctcaggccatgtccctggcatttgggatagcttctgatgaaaaatttgttatcacc
acaacaaataggaaagaaattacagaagacaacttcagtgaactcgttcaaggcggagtt
actttgtatctgttgcagacagtggatcagacgctactttcagcaacaaaggagcgaatt
gacttcctgccgcactatgatacgcttgtcaaaagtggcatatatgagtattatgctagc
gaagggcaaaaccctctgccatttgcccttgctgagttgattgacaattctctgtcagcg
acgtcccgaaatactggtattcggagcatacagataaagttgttatttgatgactcccaa
ggcaaaccagcagttgcggtcattgataatggaagaggaatgacttctaaacagcttaac
aactgggctgtgtatagattgtcaaagtttacaagacaaggtgactttgagagtgatcat
tcaggatatgtgcgccctttaccagtgcctcgtagcttaaatagcgatatctcatatttt
ggagttggaggtaaacaagcagtgttcttcgttggacagtctgccagaatgataagcaaa
cctgcggattctcaggatgttcatgagtttgtcctttctaaagaagattttgaaaagaag
gagaaaaacaaggaagcaatatatagtgggttcattagaaacagaaagccatctgattct
actcacatcacaagtgatgatgaaagatttcttcataatctaatactagaagaaagggat
aaagagagtttcacagcagttatcattacaggtgtacaaccagatcatatgcagtatttg
aaaaactattttcatctttggacaagacagctggcacatatctatcattattatatccat
ggaccaaaaggaaatgaaactaatgctacagtgaaagatgtgggccctttcaacaacatt
gatattcagatttcattgtttgaaaaaggaaaagtaccaaagattgtcaatctgagggag
atcaaagatgacatgcagactttgtatataaatactgcagcagatagttttgagtttaag
gcacatgttgaaggagaaggtatagtggaagggattattcgataccatcccttcctctat
gataaagaaacataccctgatgatccatgctttccatcaaaattaaatgatgacaacgat
gatgatgactgctttatagtagagaagggtgccagagggaaaaggcctatctttgaatgc
ttttggaatggaagattaataccatacacaactgtggaagatttcgactggtgcactcct
ccgaagaagaggggattagcaccaattgagtgctacaacagaatttctggtgcattattt
accaatgataagtttcaggtcagcacaaacaagctcactttcatggatttggagctaaag
ctaaaagataagaatactctgttcacaagaatcttcaatggacaggagcagagaatgaaa
attgatagagaatttgctttgtggctcaaagactgtcatgagaagtatgataaacagata
aaattcacagtatataaaggaataactacacgtactgatttgctatccaaaaggatgcag
agcccttggacagtgtactctgccatagagtgggatgggaaaacatacaaaactgggcag
ctggtgaaaactattaagactctcccaatattctatggaactattgagaatttttttctg
tatggagaccacgatggggatatatttgctactggaggagaggttcagattgctttggaa
cctcaggcattgtatgcggaaaggaaaactattccaatttcaaaactagacagaacagtt
tctgaaaaagctgttaaaaaatacatagaagatgaaatggcaagacttcctgacagattg
tcagtaacatggcctgaaggggatgagttactaccaaatgaaacaagatttgctggtaca
ccaataggagctttaagaatagaaattttgaataaaaaaggagaagcgatgcaaaaactt
cctggtacaagccatggtggctcaaagaaacttctcgttgagctcaaggttgtcttacat
tcacctactgggaataaagaaataatttctcatatcagtcagcatggaggcaaatggcca
tactggtttaaaaaaatggaaaatcttcagaaacttgggaactacaccttgaagttgcaa
gtggtattgaatgaaagtaatgcagacacttatgcaggaaggcctctgccatctaaaata
tttaaatttactatcatagagggcaaaccagagaagttttcagtgggtcttttggagctt
ccttttcgagttggagtaccttttaatattcctttggaattgcaggatgagtttggtcat
gcaacacagttgacaactgattttaaaccaattcttgaagctagtggcttgacattacga
tatgaagaaataaccaaaggaacaaattgcatcattaagggtgtcactgctaaaggctgt
ataaatagttaccagggcaagaactttaatctgaaggttactctccctggcttgaaagaa
gacacacaaatttgtaaaataagattgcaacctggtcctcctcgtcagttgaaagtaaaa
ccagattctgaagttctaaagattgagaatggcacagctttcccctttcaggttgaagta
ttggatgaatcgggaaacataacggcacagccaaagttaatagttcactgtaagtttata
ggtgcttcaaacctgcctgtgtatgccgtggactgcagtaatgcaggaacaaacatttta
accggtccagctatacaggtacagaatataaagaaggaccagatcctcaaagcaaagatt
gaaatacctagctgtaaagatgtgccaccagtggaaaagatgattaaacttcttcctagc
agtcatgttgcaagactgcagatcttaagtatggatggacaaaaagctattcaaattaaa
catcaagatgaaattaattggcttgctggagatgtcatgcacaaccttatatttcagatg
tatgatgaaggagaaagggagatacacataactccagctctggcagaaaaaattaaggtg
aactggacacccaaaattaacagagacaatttgattcaaggtttactacctgatgtaaaa
ataccaacatcagtaaaagatgtacgttactgtcttattacttatcttgatgaccacgtg
tcactggagagtgcatttacagtcagaccactgcctgatgaacccaaacatattaaatgt
aaattaaaaggaccaaacacactgcagatgggtgaagaactacaaagtgagattgatgtc
atgataacggatcagtatggaaaccaggttcagacagtgacatcttcttgtataaattcc
ctgggagtttctgggcctggacttgataagtcaaatttgaaaatatcttggcaggaaagt
acactaacaatgagaatcaaaggtattcggtttaaaccctgtttacctggaagcaaagaa
ttgtgctttgcttggcgtgaattttccgattttctcagagtaaatttaattgcaggatct
cctgctaagttgcaacttgtggattggccagacttagataagcctattgcagtgattaat
ggtagagaactgcagaagcctcttgtagttcaattgtgtgatcagtggggaaatccatct
cctgaacctaacgtcaaaatcagtcttatgaagagtaacaacttaaagattgttctttca
aaccagcaacataaaacagatgaaaatggtagggctaacctgggaattattggcattcat
gcacctagaggagagcacactttacagcttaaagcctcatacaacaagaccatattagat
tgccctgtaatcacattaaatgtcctgctggacccagagaaacctgtccagttgaatgtt
aaatatgacaaaaatgcttcatttcctgcaggaggtactttccctgattttatggttagt
gttctttctgaagacagcaacattattaaaaatattaatcccgcacggatcactatgaaa
atgtgggaagggctgggctgcggaactagaatggcaattgattcttttcaggttaccacg
tttagctgtagtaaagtgaaggatgacaaggaagacggcttcttttacttcagggataaa
gtgattccagagagagtggggaattacaatatccagtttacttttgctatggataagaca
aatatgctcaacagtgaccagattgtagtggaagttgtacctaatgagccagtacgcttg
tcacctgattctttaccagccactccagcagtttccaacgttcgagctgttactagtcgt
acgctggtcaaggatttacacctccatgtagtggatgaatacaacaaccgtactggaatt
gatttagttggcagaataatagcaaaaattaagagccccaatgatgaggatacagagatc
ccacagtttcagggtaaagtcagtacagtcgagtttccatttgacagaggatcagctgaa
attaatctagtcctggccgaaaacagtcctggaagagatagttctgaatatattcttgta
tttgagccagatctgccaaccttggaaaaatctttggaaccataccatctgtcatttatg
ttttacaatgatttcaagaaacagcaacagatggcaacacttacgagggagagagaccaa
ttgtctcagtccataggagtttatagaaattggtttgatactactaaccagcttgtaact
gaaatgaaatgtcaggctaaggaagctgaaacaagagaaactcacctgaagaatgaactg
agaaagcatcaaattgatttaccacagactaacgtacttcaatatgtggattctctcata
aaacagaagatgatggatcaagaaggagtcatgaagcagccaagacgaacttgcaccctc
ccaaattatccaaaaggcaaccaggatattttaggcaaaattgcacatttagcacaaatt
gaggataacgaagcagcgaaagttatctcttggcatttggccagtgacatggactgtgta
gtcacgctgactactgaagcagctcgttccatttttgatgaaactcaaggtcgacagcag
gtgttaccccttgattccatttacaagaagacacttcctgattggaacaggcctttgcca
cacttaagaaatggaagaatctgcttcagacctgttggaaatcctgtatttgccagagat
ctgctaacatttccagataatgcagagcattgtcaaacagtgttcgggatgcttttgggt
gacactatcattatagataacttggatgctgccaatcattacagaaaagaggttgtaaaa
atcacccattgccctacactgctgactagggaaggagacaggattcgcagtaatggaaaa
tttggaggccttcagaataaagctcctccaatggacaaactcagaggaatggtctttgga
gcacccatgccgaaactctactccactctctccggacagatagatcttcttcagcaatac
cggacagcagtggtgaaacttgataatgcgaataaggatcttgaatcacagctgcggtca
cttaacactccagaaatgcaaaagaaaaaacaggaacttgctgaacaagagaaaaacctc
aagctgatagaacaaaaactgggtatgaccccgtcagataaggtcactgaaacatttctt
cagcctgtaatgctagaaatgtgtgacactcctatccctccaaaaagaatgcgaagagac
acattaaaaaaattatatggagcagaagaatggatctcttctcctggtaaaaagcagcag
cagcagcagccactgcagatacccacttcagaacttaatggaactccacgaaagagaaag
gcatag
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