Nothoprocta perdicaria (Chilean tinamou): 112946882
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Entry
112946882 CDS
T07556
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03013
Nucleocytoplasmic transport
npd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112946882 (UPF1)
03015 mRNA surveillance pathway
112946882 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npd03019
]
112946882 (UPF1)
Enzymes [BR:
npd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112946882 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112946882 (UPF1)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112946882 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112946882 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112946882
NCBI-ProteinID:
XP_025894619
Ensembl:
ENSNPEG00000002644
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAAPGQGQG
PAGAGQGPPGAIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFAIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccgcccgggcccgggcaggcggcgccggggcagggccaaggc
ccggccggagcggggcagggcccgccgggagccatcgaggcccaggttaacggaccwgat
ggcattctgcagaatggagctgtagatgataacgtggctaaaaccagccagcttctggca
gagctgaattttgaagaagatgaggaggatacctattacacgaaggacctccctgtgcat
gcctgcagctactgtgggatccatgacccagcttgtgtggtttactgcaacaccagcaaa
aaatggttctgtaatgggcgtggaaatacttctggcagccacattgttaatcaccttgtg
agagcgaagtgcaaagaggtgactctccacaaggatgggcctctgggagagactgtcttg
gagtgctataactgtggatgtcgtaatgtgtttctcctgggctttattccagccaaagca
gactctgtggtggttttgctgtgcaggcaaccatgtgccagtcagagcagcctgaaggat
attaactgggacagttcacagtggcagcctctcatccaggaccgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagctgagagcgcgtcagatcacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaaccctggaggatttagaa
aagccaggtgttgatgaagaaccacagcatgtccttcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagactcaagataacatcacagtcagatgggacttgggcttgaacaagaaaaga
attgcttatttcactttgccgaagactgattcagatatgcgccttatgcaaggagatgag
atctgcttgaggtataaaggagacctggctcctttatggaagggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgagaagcagc
gttggagcacctgtggaagttactcataacttccaagttgattttgtatggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtct
gggtacatctatcacaagctgttagggcacgaggtagaagatgtaattattaaatgccaa
ttgccaaagcgctttacagcacaaggactgcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcccctgagtctcattcagggtccccctggtacaggaaaa
acagtgacgtcggccacaattgtctatcatctggctagacagggcaatgggcctgtattg
gtttgtgctccaagtaacatagctgtagatcagttgactgagaagattcaccaaactgga
ctgaaagtmgttcgcctgtgtgctaaaagtcgtgaggcaattgactctcccgtgtccttc
ttggcgttacacaaccaaatcagaaacatggatagtatgccagagcttcagaaactgcag
caacttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgggcactg
aagcgaacagcagagcgtgaattacttatgaatgcagacgtgatctgttgcacgtgtgtg
ggagctggtgatccaagactggcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctacggagccagagtgcatggtgcccgttgtcctgggggcaaagcagctaatt
ctggtgggtgaccactgccagcttggtcctgttgtgatgtgcaagaaggctgccaaggct
ggtctctcccagtctctcttcgagagacttgtggtgctggggatccgtcccattcgcctc
caggtgcaatatcgcatgcatcctgccctcagtgcttttccatccaatatcttctatgag
ggttcactccagaacggtgttactgcagctgaccgtgtgaaaaagggatttgatttccag
tggccacagccagataaaccaatgtttttctatgttacacaaggacaggaagaaatcgcc
agttcaggcacctcttacttaaacaggacggaagcggccaatgtggagaagataacaacc
aagttattgaaggctggtgccaaaccagaccagattggcattattactccctacgaaggt
caacgatcttatctggtgcagtacatgcaattcagtggttccctgcatacaaaactctac
caggaagtggaaattgcgagtgtggatgccttccagggacgagagaaggactttattatc
ctttcttgtgtaagggccaatgaacaccaagggataggatttctgaatgaccctaggcgt
cttaatgtggctcttacaagagcaagatacggagtgattattgttgggaacccaaaagcg
ctgtctaagcaaccactttggaatcacctgctgaactactacaaggagcagaaggttctg
gtggagggaccgctgaacaacctccgggaaagcctcatgcagttcagcaagccccggaaa
cttgtcaataccatcaatcctggtgcccgtttcatgactactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccatgaccagatcgggatgattagtgctggccccagccacgtcactgct
atgaacattcccatccctttcaacctcgtgatgccaccgatgccaccaccgggatacttt
ggccaggccaatggaccagctgcaggacgtggggcaccaaaaggaaagaccggtcgtggt
gggcggcagaaaaaccgttttgcgattcctggaactagtcagtcaaaccttccaaatagt
caagcaagccaagatgtggtgtcccagcctttctcccagggtcccctgactcaggggtat
atctccatgagtcagccgtcgcagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagatcgatgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
