KEGG   Nothoprocta perdicaria (Chilean tinamou): 112954082
Entry
112954082         CDS       T07556                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
npd  Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03030  DNA replication
npd03410  Base excision repair
npd03420  Nucleotide excision repair
npd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:npd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112954082 (LIG1)
   03410 Base excision repair
    112954082 (LIG1)
   03420 Nucleotide excision repair
    112954082 (LIG1)
   03430 Mismatch repair
    112954082 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:npd03032]
    112954082 (LIG1)
   03400 DNA repair and recombination proteins [BR:npd03400]
    112954082 (LIG1)
Enzymes [BR:npd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     112954082 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     112954082 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     112954082 (LIG1)
DNA replication proteins [BR:npd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    112954082 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     112954082 (LIG1)
DNA repair and recombination proteins [BR:npd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     112954082 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     112954082 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     112954082 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme PGM1_C
Other DBs
NCBI-GeneID: 112954082
NCBI-ProteinID: XP_025903012
Ensembl: ENSNPEG00000015954
LinkDB
Position
Unknown
AA seq 921 aa
SPALEQRGEPPENGEPPGHGEPPENGEPPGRGEPPGRGSSGLRRTAAPKRAPKRKTGRVP
EPDGKRPRGEAGERRPGGLGALGPLTPAGRQRGGLGTPEEEEEDRRPEEETDRRLEEEDR
RPEEEEDRRPAEEEDRRPEEETDRRLEEEDRRPEEEEDRRPKEEEDRRPEEEAARRPKEA
QEPEEETDRRPAEEEDRRPAEASARPRPSKALADFFAPRKGSGAKAAPKAAASEASASAE
GTHGPSDPARPPDPARPPDSSQPPDPAQYDPSKSGYHPVRDACWAPGQRVPYLAVARTLE
RIEEVSARLRNIETLSNFLRSVIALSPRDLLACLYLCLNRLGPACEGLELGVGESLLAKA
VAQATGRQLEQVKSEAQEKGDLGLVAESSRGRQRTVVAPAPLSAPGVLAKLQDVARMAGA
ASTHKKIEVIKGLFVACRHSEARYVARSLGGKLRVGLAEQSLLVALAHAASLTPPAQGWP
PAVVDAGQGKSAEARKAWLEERSQILKQTFCELPNYDLLVPALLEHGLENLPRHCRITPG
IPLKPMLAQPAKGVAEVLKRLEEAAFTCEYKYDGERTQIHVLESGAVYVYSRNQENTTSK
YPDLVARIPKVKKEHVRSCILDAEAVAWDAEKKQIQPFQVLMTRKRKDVEAAAIKVQVCL
YAFDMLYLNGESLVKEPLSKRRRLLREAFVEAEGEFLFAASVDAGGAEELSEFLERSIKD
SCEGLMVKTLDVEATYEIAKRSHKWLKLKKDYLEGLGDTLDLVVIGAYLGKGKRVGVYGG
FLLACYDEESEEYQSICKIGTGFTEENLEQHYGLLKDHVLPRPRPYYRWDSGAAPDRWLE
AVQVWEVKCGDLSISPVYKAAVGLVDEEKGISLRFPRFVRVREDKRPEEATSSSQVAELY
RRQQQIQNQQLPEQGEDGGFC
NT seq 2767 nt   +upstreamnt  +downstreamnt
gtcgcccgccctggagcagcgcggggagcccccggaaaacggggagcccccgggacacgg
ggagcccccggaaaacggggagcccccgggacgtggggagcccccgggacgcggctcctc
cggcctccgccgcaccgcagctcctaagcgggcgcctaagcgcaagaccggccgcgtccc
ggagcccgatggcaagcggccgcggggagaggccggggagcggaggccggggggcctcgg
cgccctggggcccctgacgccggccgggcgccaacggggtggcctggggaccccggagga
ggaggaggaggatcggaggccggaggaagagacggatcggaggctggaggaggaggatcg
gaggccggaggaggaggaggatcggaggccggcggaggaggaggatcggaggccggagga
agagacggatcggaggctggaggaggaggatcggaggccggaggaggaggaggatcggag
gccgaaggaggaggaggatcggaggccggaggaggaggcggctcggaggccgaaggaggc
tcaggaaccggaggaagagacggatcggaggccggcggaggaggaggaccggaggccggc
ggaggcctcggcgcggccgcggcccagcaaagccctcgccgacttctttgcgcccaggaa
aggctccggcgcgaaggcggcgccgaaggccgcggcctccgaggcttcggcctccgctga
aggcacccacggcccctcggatcccgcccggcctccggatcccgcccggcctccggattc
atcccagcctccggatccggcccagtacgacccgtccaagagcggctaccacccggtccg
cgacgcctgctgggcgcccgggcagagggtgccctacctggccgtggcgcgcaccttgga
gcgcatcgaggaggtctctgcgcggctgaggaacatcgagaccctgagcaacttcctgcg
ctcggtcatcgcgctgtccccgcgcgacctcctggcctgcctctacctctgcctcaaccg
cctgggcccggcctgcgaggggctggagctgggcgtcggcgagagcctcctcgccaaggc
cgtggcgcaggccacgggccgccagctggagcaggtcaagagcgaggcccaggagaaggg
agacctgggcctggtggccgagagcagccgcggccgccagcgcaccgtggtggccccagc
gccgctcagcgcgcccggcgtgctggccaagctgcaggacgtggcccgcatggcgggcgc
cgcgtcgacgcacaagaagatcgaggtcatcaaggggctcttcgtggcctgccgccactc
ggaggctcgctacgtcgcccgctcgctgggcgggaagctccgcgtcgggctggccgagca
gtcgctgctggtggccttggcccacgccgcctcgctgacgccgcccgcgcaagggtggcc
gccggccgtggtggacgccggccagggcaagtcggccgaggcgcggaaggcctggctgga
ggagcggagccagatcctcaagcagacgttctgcgagttgcccaactacgacctcctggt
ccccgcgctgctggagcacggcctggagaacctgccccggcactgccgcatcacgccagg
gatcccgctcaagcccatgctggcccagcccgccaagggcgtcgcggaggtcctcaagcg
cctcgaggaggccgccttcacctgcgagtacaagtacgacggcgagcgcacccagatcca
cgtgctggagagcggcgccgtctacgtctacagccgcaaccaggagaacaccacgtccaa
gtaccccgacctcgtcgcccgcatccccaaggtgaagaaggagcacgtgcgctcgtgcat
cctcgacgcggaggccgtcgcgtgggacgcggagaagaagcagatccagcccttccaggt
gctgatgacgaggaagaggaaggacgtggaggccgccgccatcaaggtgcaggtgtgcct
ctacgccttcgacatgctctacctcaacggggagtcgctggtcaaggagcccctgtccaa
gcggcggcggctgctgcgcgaggccttcgtggaggccgagggcgagttcctcttcgccgc
ctccgtggacgccggcggcgccgaggagctctccgagttcttggagcgctccatcaagga
ctcctgcgagggcctcatggtgaagacgctggacgtggaggccacctatgagatcgccaa
gcgctcgcacaagtggctgaagctcaagaaggactacctggaagggctgggcgacacgct
cgacctggtggtcatcggcgcctacctgggcaagggcaagcgcgtgggcgtctatggggg
cttcctgctggcctgctacgacgaggagagcgaggagtaccagagcatctgcaagatcgg
gaccggcttcaccgaggagaacctggagcagcactacggcctcctcaaggaccacgtcct
gccccggccgcggccctactaccgctgggacagcggcgccgcccccgaccgctggctgga
ggccgtgcaggtctgggaggtcaagtgcggcgacctctccatctcgcccgtctacaaggc
cgccgtggggctggtggacgaggagaagggcatctccctgcgcttcccccgcttcgtccg
cgtgcgggaggacaagaggcccgaggaggccacgagcagctcccaggtggccgagctcta
caggaggcagcagcagatccagaaccagcagctgcccgagcaaggggaggacggggggtt
ctgctga

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