Natronomonas pharaonis: NP_3474A
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Entry
NP_3474A CDS
T00279
Symbol
ligB
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nph
Natronomonas pharaonis
Pathway
nph03030
DNA replication
nph03410
Base excision repair
nph03420
Nucleotide excision repair
nph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP_3474A (ligB)
03410 Base excision repair
NP_3474A (ligB)
03420 Nucleotide excision repair
NP_3474A (ligB)
03430 Mismatch repair
NP_3474A (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nph03032
]
NP_3474A (ligB)
03400 DNA repair and recombination proteins [BR:
nph03400
]
NP_3474A (ligB)
Enzymes [BR:
nph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NP_3474A (ligB)
6.5.1.6 DNA ligase (ATP or NAD+)
NP_3474A (ligB)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NP_3474A (ligB)
DNA replication proteins [BR:
nph03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NP_3474A (ligB)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NP_3474A (ligB)
DNA repair and recombination proteins [BR:
nph03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NP_3474A (ligB)
NER (nucleotide excision repair)
Other NER factors
NP_3474A (ligB)
MMR (mismatch excision repair)
Other MMR factors
NP_3474A (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAI49828
UniProt:
Q3IPX0
LinkDB
All DBs
Position
1674983..1676629
Genome browser
AA seq
548 aa
AA seq
DB search
MEFAEFAARAAEIESEPADLETVDLVATLCADAGDDLGTVARFVQGRVFPAHDSTKLDIG
PSLCYEALAKAAGPNVDSDDIERRLAEVGEIGAVAESLDLGGQQGLAAFGGGTDREALTV
SGVEETLQALAAAAGDGSTDAKRDRLFDLFNRAEPTEARFLARLVLGEMRVGVGEGTVRD
AIAAAFEVPEPDVERALQVANDCGLVAETARDDGAAGLDDIGLVVGRPVKAMLAQAGTAV
EALDEWGTAAVETKYDGARVQVHYDGDSARLFSRNLEEVTEPLPEVVEFVEQSLSVPAIL
DGEVVAVDDDGTPRPFQEILRRFRRKHDVAAAREDVSVELYAFDCLHVDGEDLLDTPLSE
RHDRLESLLADGVSPLSYADDADEVADIEADALDAGHEGIMLKNPDSTYTPGSRGKNWLK
RKPDVETLDLVVTGAEWGEGRRANLLGTFVVSARADDGYEPVGKVATGITDEELERLHER
LQPHVRTEDGTDVDIEPAVVFEVGYEEIQQSPTYGSGYALRFPRFVGVREDKSPSDADSL
ERIDRLTS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgccgagttcgccgcccgtgccgcggagatagagtccgaaccggccgacctg
gagacggtcgacctcgtcgcgacgctgtgtgccgacgccggcgacgacctcgggacggtc
gcccggttcgtccaggggcgggtgtttccggcccacgacagcacgaaactcgatatcggc
ccctcgctgtgttacgaggcactcgccaaggccgccggcccgaacgtcgacagcgacgac
atcgagcgccggctggcggaggtcggcgaaatcggggccgtcgccgaatcgctcgacctc
ggcggacagcagggactggccgcgttcgggggtggcaccgaccgcgaagcactgaccgta
agcggcgtcgaggagacgctacaggcacttgcagccgctgcaggcgacggcagcactgat
gcaaagcgcgaccggctgtttgaccttttcaatcgagccgagccgaccgaggcgcggttc
cttgcccggctggtgctcggcgagatgcgcgtcggcgttggcgagggaaccgtcagggat
gccatcgcggccgcattcgaggtcccggagccggatgtcgagcgggcgttgcaggtcgca
aacgactgcgggctggtcgccgagacggcccgcgacgacggtgccgccgggctcgacgac
atcgggctggtcgtcggccggccggtcaaggcgatgttggcacaggccggcaccgccgtc
gaagcgctcgatgaatggggaacggcggctgtcgagacgaagtacgacggcgcgcgggtg
caggtccactacgacggtgactcggcgcgactcttctcccgaaacctcgaagaagtaacc
gagccgctgccggaagtcgtcgagttcgtcgaacagtcgctgtcggtgccggccatcctt
gacggcgaagtcgtcgccgtcgacgacgacgggaccccccggccgtttcaagagatactc
cgccggttccgccgaaagcacgacgttgctgccgcccgggaagatgtttccgtcgagctg
tacgcctttgattgtctccacgtagacggcgaagacctcctcgataccccgctgtcggag
cggcacgaccgactggagtcgctgcttgcggacggtgtctcaccgctttcctacgccgat
gatgccgacgaggttgccgacattgaagccgatgcgctcgacgccgggcacgaaggcatc
atgctgaagaaccccgactcgacctatacaccgggcagtcgggggaaaaactggctcaag
cggaagccggacgtagagacgcttgatctggttgtcaccggtgccgaatggggtgagggc
cggcgggcgaacctactcggcacgttcgtcgtttcagcccgtgctgacgacggctacgag
ccagtcggcaaagtggcaaccggcattaccgacgaggaactcgaacggctccacgagcgg
ctccaaccccacgttcgcaccgaggacggcaccgatgtcgatatcgaaccggctgtcgtc
ttcgaggtcggctacgaggagatacagcagtcgccgacctacggttccggctatgcgctt
cggttcccgcgctttgtcggcgttcgcgaggacaaatcgccgtccgacgccgacagcctc
gaacgcatcgaccgcctgacatcgtag
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