Nocardioides piscis: G7071_00400
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Entry
G7071_00400 CDS
T07459
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
npi
Nocardioides piscis
Pathway
npi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G7071_00400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npi03400
]
G7071_00400
Enzymes [BR:
npi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G7071_00400
DNA repair and recombination proteins [BR:
npi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G7071_00400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QIK74125
UniProt:
A0A6G7YBF0
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All DBs
Position
complement(67480..68394)
Genome browser
AA seq
304 aa
AA seq
DB search
MTPTSEVHVDVEGRTLRITSLDKVLYPRTGTTKGEVLNYYASVAGVLLPQLRDRAVTRIR
WPHGVQGSSFFEKNAPSGTPSWVRTATVPTTGTRSASDSDTIRFPICDDLATLTWLVNLS
ALELHVHQWRVTKAGRPRKPDRLVIDLDPGEPAGLHECCQVALRVRDALAERGLTCSPVT
SGSKGLHLYAVLPASGRPRLDSDGTTALAKEIAEGLQKADPALVTATMTKAKRPGKVFLD
WSQNSGSKTTISPYSLRGRERPTVATPVTWDEVERGAEDPLGLEQFRFEEVIDRVRDMGD
LFLG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccgaccagcgaggtccacgtcgacgtggagggacgcaccctgcggatcaccagc
ctggacaaggtgctctatccccgcaccggcaccaccaagggcgaggtcctcaactactac
gcatcggtggccggcgtgctcctcccgcaactgcgggaccgggcggtcacccggatccgc
tggccccacggcgtgcagggcagcagcttcttcgagaagaacgcgcccagcggcacgccg
tcgtgggtgcggaccgcgaccgtgccgacgacggggacccggtcggcgagcgacagcgac
acgatccggttcccgatctgcgacgacctcgccacgctgacctggctggtcaacctctcg
gcgctcgagctgcacgtgcaccagtggcgggtgaccaaggcgggccggccgcgcaagccg
gaccggctggtgatcgacctcgacccgggtgagcccgccggcctccacgagtgctgccag
gtggcgctgcgggtccgcgacgcgctcgcggagcgtggcctcacctgcagtcctgtcacc
agcggaagcaagggcctccacctgtatgccgtgctgccggcctccggtcggccgcggctc
gacagcgacggcacgacggcgctggccaaggagatcgccgagggcctgcagaaggcagac
cccgcactggtgaccgccacgatgaccaaggccaaacggcccggcaaggtcttcttggac
tggtcgcagaactcgggctccaagacgaccatctccccctactccctgcgggggcgcgag
cggcccacggtggccacccccgtgacgtgggacgaggtggagcggggggccgaggatccg
ctcgggctggagcagttccgcttcgaggaagtcatcgatcgtgtccgcgacatgggagac
ctcttcttgggatag
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