Neorhizobium petrolearium: QEO92_09730
Help
Entry
QEO92_09730 CDS
T09021
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npm
Neorhizobium petrolearium
Pathway
npm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QEO92_09730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npm03400
]
QEO92_09730 (mfd)
Enzymes [BR:
npm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QEO92_09730 (mfd)
DNA repair and recombination proteins [BR:
npm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QEO92_09730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Esterase_PHB
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WGI70294
LinkDB
All DBs
Position
1902500..1906009
Genome browser
AA seq
1169 aa
AA seq
DB search
MIPGFDAKRITAAGSSLTIGNVPPGMEPLILAELARAGQPIAYVMSDGQSMPDLEQMLSF
VAPEIPVLTLPAWDCLPYDRVSPSADVSARRLAALSGLIAHRKKPHAAIVLVTVNAMLQK
IAPAEIIESLAFSAKPGNQVRMDDIAARLERNGFERVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRSFDPASQRTTGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYERLETAFDYLQGFRIVTDHTAREAATERSKL
VLDYYEARRDSGREGKGAAAQAAPYKPISPGQLYLDGKAFASALDAVGALRVTPFNEVDA
EGRHVVTVGAHAGPRWAKNQAEDKARDERVNVFDLVVKHIADKRAEGIKVLVTGWSAGSL
DRLLQVLDERGLKRIRPVEKLSDLDLLEKGEAASAVLSLEAGFETDSIAVIGEQDILGDR
MVRRGKRRKRGADFLTEVTGLDEGSLVVHAEHGIGRFVGLVTIEAAGAPRACLELHYADQ
AKLFLPVENIDLLSRYGSDAAEAQLDRLGGGAWQARKAKLKKRLLDMADDLIRIAAARMT
RRAPVLTTPEGLYDEFAARFPYDETEDQANAIDAVRDDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFFAAMNGAQVAVVVPTTLLARQHYRTFKERFRGLPITIAQASRLVSAKELADTKK
GLAEGKVDIVVGTHALLGAGIKFANLSLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCP
RIADLPEIQDFLQSDVPELKVAVAHGQMPAGELEDIMNAFYDGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKPLTTTADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDDEITDTGW
SPQISVGITVMIPESYVPDLHLRMGLYRRLGELTELSEIDGFGAEMVDRFGPMPPEVQNL
LKVVYIKSLCRKANVEKLDAGPKGLVVSFRDKQFPNPAALVGYIAKQGTLAKIRPDQSVF
LTRDLPSPMKRLTAAAQVMTQFAELAKDD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgattcccggatttgacgcgaaaagaataacggcggcaggaagttcgctcaccatcggc
aacgtgccgcctggcatggagccgctcatcctggcggagctcgcgcgcgccggccagccg
atcgcctatgtcatgtccgacgggcagagcatgcccgatctggaacagatgctgtccttc
gtcgcgccggaaattccggtcctcacgctgccggcctgggactgccttccctatgaccgg
gtctcgccgagcgccgatgtctccgcgcggaggctggcggcactctccggcctgattgcg
catcggaagaagccgcatgcggcgatcgtgctcgtcacggtcaacgccatgctgcagaag
atcgctcccgccgagatcatcgaaagtctcgccttctcggccaaacccggtaatcaggtg
cgcatggacgacatcgccgcacgactggagcgcaacggcttcgagcgcgtggcgaccgtg
cgcgaggtcggtgagttcgcggtgcgcggcggcattctggacgttttcgtgccgggtacg
gaagagccggtgcggcttgatttcttcggcgatacgctggagtcgatccggtccttcgat
ccggccagccagcgcacgacaggccaggcgaggtcgctcgatctgaacccgatgagcgag
gtgacgctgacgcccgatacgatcagccgtttccgcaagaactacctttcgcttttcggt
gccgcgactcgcgatgacgcactctatcaggcggtatccgaaggccgccgctatgccggc
atggaacattggctgccgctgttctacgaacggcttgaaaccgccttcgactacctccag
ggcttccgcatcgttaccgaccatacggcgcgtgaagcggcgaccgagcgttcgaaactc
gttctcgactattatgaggcgcggcgcgatagcggcagagaaggaaagggcgctgcagca
caggccgccccttacaaacccatttcgccaggtcagctttatctcgatggcaaggcgttt
gcatcggcgctcgacgccgtcggcgcactccgggtgacacccttcaacgaggtggatgca
gaagggcgccacgtggtgacagtaggcgcccatgccggcccgcgctgggcaaaaaaccag
gccgaagacaaagcgcgcgacgaacgcgtcaacgtcttcgacctcgtggtcaagcacatc
gccgacaagcgcgccgaaggcatcaaggtcctcgtcaccggctggtcggccggctcgctc
gaccgcctgctgcaggttctggatgagcgcggcctgaagcgcatcagacccgttgaaaag
ctctccgacctggatctgctcgaaaagggcgaggcggcttccgccgtcctcagcctcgaa
gcgggttttgagacggatagcatcgcggtcatcggcgagcaggacatcctgggcgatcgc
atggtccgccgcggcaagcggcgcaagcgcggggcggatttcctgacggaagtcaccggt
ctcgatgaaggttctctcgtcgtccatgcggaacacggtatcggccgtttcgtaggtctc
gtcacgatcgaggcggccggtgcgccgcgcgcttgcctggaattgcattatgccgatcag
gcaaagctcttcctgccggttgaaaacatcgatcttctgtcgcgctacggttccgatgcg
gccgaagcccaactcgacaggcttggcggtggtgcatggcaggcccgcaaggcgaagctc
aagaagcggttgcttgacatggcggacgacctgatccgcatcgccgccgcacgcatgacc
cgccgcgcgccggtgctcacgacgccggaggggctttatgacgaattcgccgcccgcttc
ccctatgacgagaccgaggatcaggcgaatgcgattgacgccgtacgcgacgatctcggc
gccggccggccgatggatcgcctcgtctgcggcgacgtcggtttcggcaagacggaagta
gcgctgcgcgccgccttctttgctgcgatgaacggcgcacaggtggcggtcgtcgtgccg
accactttgctcgcccgccagcactacaggaccttcaaggaacgcttccgcggcctgccg
atcacgatcgcccaggcatcgcgcctcgtctccgccaaggagctggcggataccaagaag
ggcttggccgagggcaaggtcgatatcgttgtcggcacccatgcgctgctcggtgccggg
atcaagttcgccaacctcagtctgctcatcatcgacgaggagcagcatttcggcgtcaag
cacaaggagcggctgaaggaactcaagagtgatgtgcatgtgctgacgctgtcggcgacg
ccgatcccgcgcacgctgcagcttgccatgaccggtgtgcgcgaactctcgctcatcacg
acgccgccggtcgaccgcatggcggtacgcaccttcatctcgcccttcgacccgctcgtc
atccgcgagacgctgatgcgagagcattatcgcggtggccagagtttttatgtctgcccg
aggattgccgatctgccggagatccaggatttcctgcagtcggacgtgccggaattgaag
gttgcggttgcccacgggcagatgccggccggcgaactcgaagacatcatgaatgccttc
tacgacggcagatacgacgtacttctatcgaccaccatcgtcgaatccggcctcgacgtg
ccgaccgccaatacgctgatcgtccaccgggccgatatgttcgggctggcgcagctttac
cagcttcgcggtcgggtgggacgctccaaggtgcgcgccttcgcgctctttaccctgccg
gtcaacaagccgctgacgacgaccgccgatcgtcgactgaaagtgctgcagtcgctcgat
acgctgggtgcaggcttccagctcgccagccacgacctcgacattcgcggcgcgggcaat
ctgctcggggaggagcagtcgggccatatcaaggaagtcggtttcgagctctatcagcag
atgctggaggaagctgtcgccgaagtgaagggggacgacgaaatcaccgacaccggctgg
tcgccgcagatttccgtcggcatcacagtgatgatcccggaaagctatgtgcccgatctg
catctgcgcatgggtctttatcgccggcttggcgaattgaccgaactttcagagatcgat
ggtttcggcgcggaaatggtggaccgtttcggtcccatgccgcccgaagtgcagaacctc
ctgaaggtcgtctatatcaagtcgctctgccgcaaggccaatgtcgaaaagctggatgcc
ggcccgaagggcctggtcgtcagcttccgtgacaagcagttccccaatccggcggcgctg
gtcggctacatcgccaagcagggaacgctggcaaaaatccggccggatcagagcgtgttc
ctgacgcgcgacctgccatcgccgatgaaacggctcacggctgccgcccaggtgatgacg
caatttgccgagttggcgaaagatgattaa
DBGET
integrated database retrieval system
