Neorhizobium petrolearium: QEO92_31945
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Entry
QEO92_31945 CDS
T09021
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
npm
Neorhizobium petrolearium
Pathway
npm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QEO92_31945 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npm03400
]
QEO92_31945 (ligD)
Enzymes [BR:
npm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QEO92_31945 (ligD)
DNA repair and recombination proteins [BR:
npm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QEO92_31945 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGI72506
LinkDB
All DBs
Position
unnamed2:complement(154967..156019)
Genome browser
AA seq
350 aa
AA seq
DB search
MLRARRPPLPLLDESTSSVQSRPIRKRDANQPSLPFDEMPARIEPCLALLKPTVPVGPDW
LYEVKWDGYRLAIHIEPKSVRIITRGGHDWTHRFPAIADAAEKLGLTTAILDGEAVVLDD
QGRSDFGALQRSLGGRGGKRISTESILYAFDLLYLDGHDLTRTELSVRRHLLEDVVPAEE
AGTVRLSEELTLDADSLLEHACQIGLEGIIAKHRDRPYRSGRTGDWLKIKCVQSESFMIV
GYEQSESARGGLGSLLLAGRRGYDWVYVGSVGTGFNGRQADDLKKTLDRLKTTKPVVPLK
GKRLVFAQPTLIAEIEFRGWTRDGSLRHASYKGLREIQDNAAVFDMAAKP
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgcgcccgccgaccacccctccctctgctcgatgaatcgacgtcctccgtccaa
tcccgtccgatccgcaaacgcgatgcgaaccagccgagcctgcccttcgacgaaatgccg
gcgcgcatcgagccttgccttgctctcctgaaaccgacagtgccggtcgggcctgactgg
ctttacgaggtaaaatgggacggctatcggttggcgatccacatcgagccgaaaagcgtt
cggatcatcacccgcggcggccacgactggacgcaccgatttccggcgatcgcggatgcg
gctgaaaaacttggtttaactaccgccatcctggacggagaggctgtcgtgcttgacgac
caaggccgctccgactttggggcgctgcaacgttcgctgggtggccgtggcggaaaacgc
atctcgaccgagtccatcctctacgcctttgacctgctttatctggacgggcacgattta
acacggacagagctgtcggtgcgacgtcacctgctcgaggatgtcgtgccggcggaagaa
gccggcaccgttcggctgtccgaggaactgacgctggatgccgacagcttgctcgaacac
gcctgccagatcggtttggaaggcatcatcgccaagcaccgggatcggccctaccgcagc
gggcgcaccggcgactggctcaagatcaaatgcgtgcagtcggagagcttcatgatcgtc
ggctacgagcaatcggagtctgcccgtggcggcctgggtagcttgctgcttgccggacgg
cgcggttacgactgggtctatgtcggttccgtcggaaccggcttcaacggcaggcaagcg
gatgatctgaagaagacgctcgatcggctgaagacgaccaagccggtggtgccgcttaaa
ggcaagcgtctggtgttcgcccagccgaccttgatcgctgagatcgagttccgcggctgg
acgcgggacggaagcctgcggcatgcttcctataagggcctgcgtgagatccaggacaat
gccgcagtcttcgacatggccgccaaaccctga
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integrated database retrieval system
