Nyctereutes procyonoides (raccoon dog): 129500402
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Entry
129500402 CDS
T09008
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03030
DNA replication
npo03410
Base excision repair
npo03420
Nucleotide excision repair
npo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129500402 (LIG1)
03410 Base excision repair
129500402 (LIG1)
03420 Nucleotide excision repair
129500402 (LIG1)
03430 Mismatch repair
129500402 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npo03032
]
129500402 (LIG1)
03400 DNA repair and recombination proteins [BR:
npo03400
]
129500402 (LIG1)
Enzymes [BR:
npo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129500402 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129500402 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129500402 (LIG1)
DNA replication proteins [BR:
npo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129500402 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129500402 (LIG1)
DNA repair and recombination proteins [BR:
npo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129500402 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129500402 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129500402 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
129500402
NCBI-ProteinID:
XP_055166783
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MQRSIMSFFYPKKEGKMKKPEKETSNSIRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTYPESSPSLSSTSPVDISAGIPKR
RTARKQLPKRTIQDVLEEQSKDEDREAKKKKEEEAETPPESLSEPEVTQEKEAEGEDQPV
TSPEHRETSPEPPVDSTLEPAVSGKQEAQKEDSAKLPTRAPKTVSSFFAPRKPATKKEGK
EEDPGTPRQEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSAR
LRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQ
LDSVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKID
VIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPLAVVDAGK
GRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLA
HPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRI
PKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYL
NGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVK
TLDIDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDE
ESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRVDGAVAPDHWLDPSAVWEVK
CADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKKPEEATTSGQVACLYMKQSQIQN
QQGADLDSDSDFY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttctaccccaagaaggagggcaaaatgaaaaagcca
gagaaggagacctctaacagcatcagagagacagagccacctccaaaggtggcactgaag
gagcggaatggagaggtgcctgaaagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggacgaagccctcacgccatccaaaggc
cagaaacctgccccaggctctccacaagtctcccctcccagccctgtcacatatcccgag
agcagcccttccctctccagtacctctcctgtggacatctcagcagggatcccaaagcgg
cgcacagctcggaagcagcttcctaagcggacaatacaggatgtcctggaagagcagagc
aaggatgaggacagagaggccaagaagaagaaggaggaagaagcagagaccccaccagaa
agcctctcagagcctgaagtgacccaagagaaggaggcagaaggggaggaccaacctgtg
acatcccctgagcaccgagagacctccccagagcccccggtggatagcacgttggagcct
gcggtgtctgggaagcaggaggctcagaaggaggactcagctaagctgcccaccagagcc
cccaagacggtcagcagcttctttgccccgcggaaaccggcaaccaagaaagaagggaaa
gaagaggaccctggcactccaaggcaggaggagaccaagggacccctggaccctcccagc
tacaatcctgccaagaacaactaccatcccattgatgatgcatgctggaagccaggccag
aaggtcccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcgg
ctccggatggtggagacgctgagcaacttgctgcgctctgtggtggccctgtcacctccg
gacctcctccctatcctctacctcagcctcaaccgtcttgggccgccccagcagggtctg
gaacttggtgtcggtgatggtgttctcctcaaggcggtggcccaggccacagggcggcag
ctggactctgttaaggctgaggcagctgagaagggtgacgtggggctggtggccgaaaac
agccgcagtacccagaggctcatgctgcccccacctgctctcaccgctgccggggtcttc
gccaagttccgagacattgcccggcttgctggcagtgcctccacagccaagaagatagat
gtcatcaaaggcctcttcgtcgcctgccgccactcagaagcccgattcattgccagagcc
ctgagtggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctctcccag
gccgtgagcctcacgcccccaggccaagaattccccctggccgttgtggatgctgggaag
ggccggacggcagaagcccgaaagacatggctggaggagcaaggcatgatcctgaagcag
acgttctgcgaggtgcccgacctggaccggatcatccctgtactgctggagcatggcctg
gagcacctccccgagcactgcaggttgagcccaggggttccactgaaaccaatgctggcg
caccccacccggggtgtcagcgaggtcctaaaacgttttgaagaggcagctttcacctgc
gagtacaaatacgatgggcagagggcacagatccacgttctagaaggtggggaggtgaag
atcttcagcaggaatcaggaagacaataccggaaagtacccagacatcatcagccgcatc
cccaagattaaactcccgtcagtcacgtccttcattttggacacagaagctgtggcatgg
gaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggag
gtggatgcagcagagatccaggtgcaggtgtgtctatatgccttcgacctcatttacctc
aatggagagtccctggtacgtgagcctctctcccgacgccggcagctgctccgggagaac
tttgtggagacagagggcgagtttgtgtttgccacctccctggacaccaaagacacggac
caaattgccgagttcttggagcagtctgtgaaagactcctgtgaggggctgatggtgaaa
actctggacatcgatgccacctatgagatcgccaagagatcccacaactggctcaagctg
aagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgattggcgcctac
ctgggccgtggcaaacgggctggccgctatgggggcttcctactggctgcctacgacgag
gagagtgaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggaactg
gaggagcactaccagaggctccaggccctggtgctgcccaccccacgctcctatgtccgg
gtcgacggtgccgtggcccccgatcactggctggaccccagcgccgtgtgggaggtgaag
tgtgcggatctgtccttgtcgcccatctaccctgctgcccggggcctggtggatagtgag
aaggggatctcccttcgctttcctcggtttgtccgcgtccgtgaagacaagaagccagag
gaggccaccaccagtggccaggtggcctgcctgtacatgaagcagagtcagattcagaac
cagcagggcgcggacttagactctgactcagatttctactag
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