Nanorana parkeri (Xizang Plateau frog): 108786383
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Entry
108786383 CDS
T04897
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03013
Nucleocytoplasmic transport
npr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108786383 (UPF1)
03015 mRNA surveillance pathway
108786383 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npr03019
]
108786383 (UPF1)
Enzymes [BR:
npr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108786383 (UPF1)
5.6.2.5 RNA 5'-3' helicase
108786383 (UPF1)
Messenger RNA biogenesis [BR:
npr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108786383 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108786383 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108786383
NCBI-ProteinID:
XP_018411169
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGILQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHGLPT
MNIPIPFNLVMPPMPPPGYFGQANGPTAGRGMPKGKATRGGRQKPRGIGLQGMSQGNMPN
SQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcacattcctcgacacggaggag
gccgagctgctaggggccgacactcagggctccgagttcgagtttaccgacttcactctg
cccagccaaactcagacgcaagggcaaactcaaagccagctggacggacaggttaatggc
cccgatggaattttacagaatggcacagtagatgatggtgtgggaaaaacaagccagttg
ctgggtgagctaaattttgaagaagatgaagaagatacttattatacaaaagatctccct
ttacatgcttgcagttactgtggtattcatgaccctgcttgtgtggtctactgcaataca
agtaaaaaatggttctgcaatggacgtggaaacacctctggaagccacattgtgaaccat
ctggtcagagcaaagtgtaaagaagttactttgcacaaggatggacctctgggtgaaacg
gtgttggaatgctacaattgtggttgcagaaatgtgtttctgcttggatttatccctgca
aaagctgattcagtagttgtgttgctgtgcaggcaaccctgtgctagtcaaagcagctta
aaggatattaactgggacagctctcagtggcagccccttatacaagatcgttgcttcctc
tcctggctggtgaagatcccatctgaacaagagcagctgagagctcgccagatcacagct
cagcaaataaacaagctagaagagctctggaaggaaaacccttctgcaaccctagaggat
ctggaaaaacccggtgttgatgaggagcctcagcatgttttgcttagatatgaggatgca
tatcagtaccaaaatatatttggacctcttgtaaaacttgaggctgattatgacaaaaag
ctaaaggagtcccagacgcaagataacattacagtccgatgggaccttggccttaacaag
aaaagaattgcatatttcactttgccaaaaacggattctgacatgcgtttaatgcaaggg
gatgaaatatgtttgcgttacaaaggtgaccttgcacctttgtggaaagggattggacat
gtaattaaggtccctgacaattatggtgatgaaattgccattgaattgagaagcagcgtt
ggagcaccagtggaagtaactcacaattttcaagtggattttgtatggaagtcgacatct
tttgacagaatgcagagtgcattaaagacctttgccgtagacgaaacttcagtttctggg
tacatataccataagcttcttggccatgaggtggaagatgtaattatcaaatgccagctt
cccaagagatttacagcacaaggactcccagatctcaaccactcacaggtttatgcagta
aagactgttctgcaacgcccactaagtcttattcaaggtcctcctggtactggaaaaacc
gtaacatctgctacaattgtctaccatcttgctagacagggaaatggtcctgtcttggtg
tgtgcaccaagcaacattgctgtggatcagctgacggagaagatacaccagactggcctc
aaagttgttcgcctttgtgcaaaaagtcgtgaagcaattgattctccggtttctttcttg
gcattgcataaccagattcgtaacatggaaagtatgccagagctgcaaaagttgcagcag
cttaaagatgagactggagaactttcttctgctgatgagaaacgatacagagcccttaaa
agaacagctgaaagggagctgcttatgaatgcagatgtgatttgctgtacctgtgtgggt
gcaggggatcctaggctggcaaaaatgcagttccgttcaattttaattgatgaaagtact
caagccacagaaccagaatgtatggtgccagttgttcttggagcaaagcagctaattttg
gtgggagatcattgtcagcttggaccagttgtgatgtgtaaaaaagctgcgaaggctggc
ttgtcacagtctttgtttgagagacttgtggttctaggaatcagacctattcgcctgcag
gttcagtatcgaatgcaccctgcgctgagtgcttttccatcaaacatcttctatgaaggc
tcccttcagaatggtgtcactgcagcggaccgtgtgaagaaaggttttgacttccagtgg
ccacaaccggacaagccaatgttcttttatgtaacccagggacaggaggaaattgcaagt
tcaggcacttcctatttaaacaggactgaagctgctaatgtggagaaaatcacaaccaag
cttctgaaggcaggggccaagccagatcagatagggataattactccttatgaaggccag
aggtcatatttagtacagtacatgcagtttagtggctccctgcataccaaactgtatcag
gaagtggaaattgccagtgttgacgcatttcaaggtcgagagaaggactttatcattctg
tcttgtgtaagagctaatgagcaccagggcattggatttttaaatgatccccgtcgtctg
aatgtggctttgaccagagcaaggtatggtgtaattattgtgggcaacccaaaagcctta
tcaaagcagcctctatggaatcatctacttaattattacaaagagcagaaagtccttgtg
gagggacctctgaacaatctccgggagagtctcatgcagttcagtaaaccgcgcaaactt
gtaaacaccattaatcctggtgctcgttttatgacaactgccatgtatgatgctcgagaa
gctataattcctgggtctgtctatgatcgaagtagtcaagctcgaccttcaaacatgtac
tttcaaacgcatgatcagataggcatgatcagttctggacccagccatgggctacctacc
atgaacattcctatacctttcaatctggtcatgcctccaatgcccccaccaggctacttt
ggtcaagctaatggaccaactgcaggtcgaggcatgcctaaaggaaaggcaacacgtggt
ggacgccagaaaccgagaggcatagggcttcaaggcatgagccagggaaacatgcccaac
agccaagccagtcaagatgttgtgtctcagccattctctcaaggccctttaacacagggt
tatatatccatgagccagccttcgcaaatgagtcaaccaggactctcccaaccagaatta
tcgcaggatagctaccttggtgatgaatttaagtcacagattgatgttgcattatcgcaa
gattctacttaccagggtgaacgtgcatatcaacatggaggtgtgactgggctgtcacag
tactaa
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integrated database retrieval system
