Nocardioides panacis: KRR39_14355
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Entry
KRR39_14355 CDS
T08276
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nps
Nocardioides panacis
Pathway
nps03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KRR39_14355 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nps03400
]
KRR39_14355 (ligD)
Enzymes [BR:
nps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KRR39_14355 (ligD)
DNA repair and recombination proteins [BR:
nps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KRR39_14355 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QWZ06723
UniProt:
A0A975SWP8
LinkDB
All DBs
Position
complement(2931048..2931956)
Genome browser
AA seq
302 aa
AA seq
DB search
MAEQTDEVLVDVDGRTLKISNLGKVMYPTTGTTKGEVLNYYARVSGVLLPHLAHRAVTRI
RWPHGTGDMQFFEKNLPSGAPKWLHSVTVPSTGSRGGGDTISYPVIDGLADLTYFANLAS
LELHVHQWTVGKDGRPRHPDRLVIDLDPGHPAGLRECCEVALLVRDKLAERGLSAAPVTS
GSKGLHLYAALPGALDAEEVRDQAQEIAQELTGEHPRLVVWKMTKSLRGGKVFLDWSQNT
GAKTTISPYSLRGRDRPYVATPRTWEEVEDGAEEGLGQLEMDDVLARVEEHGDIFGDLLG
RS
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcagaccgacgaggtgctcgtcgacgtggacggccggacgctgaagatcagc
aacctgggcaaggtgatgtacccgaccaccggcaccaccaagggcgaggtgctcaactac
tacgcgcgggtctccggggtgctgctgccgcacctcgcgcaccgcgcggtgacccggatc
cgctggccgcacggcaccggcgacatgcagttcttcgagaagaacctgccgtccggggcg
ccgaagtggctgcactcggtgaccgtgccgtccaccggctcccgcggcggcggcgacacg
atcagctacccggtcatcgacggactggccgacctgacctacttcgccaacctggcctcc
ctggagctgcacgtgcaccagtggacggtcgggaaggacgggaggccgcggcacccggac
cggctggtgatcgacctggacccgggccatccggccggcctgcgggagtgctgcgaggtg
gcgctgctggtccgcgacaagctcgccgagcgcggcctgtccgcggcaccggtcacctcg
ggcagcaagggcctgcacctgtacgccgcgctgcccggcgccctggacgccgaggaggtg
cgcgaccaggcgcaggagatcgcccaggagctcaccggcgagcacccgcggctggtggtc
tggaagatgaccaagtcgctgcgcggcggcaaggtgttcctggactggagccagaacacc
ggcgccaagaccaccatctcgccgtactccctgcgcggccgcgaccgtccgtacgtcgcc
accccgcgcacctgggaggaggtcgaggacggcgcggaggaggggctcggccagctcgag
atggacgacgtgctggcccgcgtcgaggagcacggggacatcttcggggacctgctcggc
cggtcctga
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integrated database retrieval system
