Nostoc punctiforme: Npun_R5494
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Entry
Npun_R5494 CDS
T00713
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npu
Nostoc punctiforme
Pathway
npu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Npun_R5494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npu03400
]
Npun_R5494
Enzymes [BR:
npu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Npun_R5494
DNA repair and recombination proteins [BR:
npu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Npun_R5494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
PsbQ
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACC83800
CyanoBase:
Npun_R5494
UniProt:
B2J5R8
LinkDB
All DBs
Position
complement(6782709..6786221)
Genome browser
AA seq
1170 aa
AA seq
DB search
MSFSSIVRALARSPLTTEFISKLNRQQELRLNGISRLPKGLVASALAQAQGKDLFVVCAT
LEEAGRVYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMSWGQMQVLADLVMGNGEENQI
PSNSQLPKMAIVATQGALQPHLPPPEAFGQFCLTLKRGMELDLNAFSEKITILGYERVPL
VETEGQWSRRGDIVDVFPVSSEFPVRLEWFGDEIEQMREFDPATQRSALDKVDQLILTPT
SFAPIVMAALNKSAEFRVLSPELNPDSELSTENSSLLEGSRRFLGLAFEQPASLLNYLSK
NTLIAIDEPEQCHAHSNRWVENAEEQWRLGAAEESSQVPKIHRSFDDCLADIAKFKTLYL
SELSEENSGINLASRSLPVTPHQFAKLAETIRQERDRNFSIWLLSAQPSRSVSLLQEHDC
PAQFIPNPRDYQAIDKLQINHTPIALKYSGLAELEGFILPTYRIVIVTDREFFGQHSLAT
PGYIRKRHKATSKQVDPNKLRPGDYVVHRNHGVGKFVKLESLTINDETRDYLVVQYADGL
LRVAADQVGALSRFRAGGDKAPELNRMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQ
QGFSFPSDMPWQEELEDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVA
IRAVFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRDIQKR
LATGELDVVVGTQQLLGKGVMFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATP
IPRTLYMSLSGIREMSLITTPPPTRRAIKTHLSPINSESIRSAIRQELDRGGQVFYVVPR
VDGIEETTANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIP
RVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQ
LGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKVEDTQ
IDLNLTAFIPADYITDLDQKMSAYRAVATAKSKSELNQIAAEWSDRYGTLPVSANQLLRV
MELKQLAKKLGFSRIKPEQKQHVVLETPMEEPAWNLLAANLPDNLKTRFVYSPGKVTVRG
LGVFKADQQLQNLIDAFGRMQGAIPEAAVV
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttctattgtgcgtgccttagcgcgatcgccgctcaccactgaatttatt
tctaagctaaaccgacaacaagaattgcggttaaatggcatttctcgattgcccaagggt
ttggtcgcttcggcattggcgcaagctcagggtaaggatttatttgtggtttgcgccact
ctggaagaagctggacgtgtttatgcacaactggaggcaatgggatggcaaacagtacat
ttttaccccacctccgaggcttctccctacgaaccttttgacccggaaactgagatgagt
tggggacaaatgcaggtattggcagatttggtaatggggaatggggaagaaaaccagatc
ccatccaattcacaattacccaagatggcaattgtggctactcaaggggcgttgcaacca
catttgcctccaccagaagcttttgggcaattctgtcttaccctgaagcgggggatggaa
ttagacctaaatgccttcagtgagaaaataactattctggggtatgaacgagtacctctg
gtggaaacggaaggacaatggagccgaaggggtgatattgttgatgttttcccagtttca
tctgagtttccagtcaggttggaatggtttggcgatgaaattgagcaaatgcgggaattt
gacccagcaacccaacgttctgcactcgataaagttgaccagttaattcttacccccact
agctttgctcccatcgtcatggcggcactcaacaagagtgctgagttccgagtgctgagt
cctgagttaaatcctgactcagaactcagcactgaaaactcatcattgttggagggtagt
cgtcgctttttggggttggcttttgagcaaccagcatctctgctaaattacctatcaaaa
aatactctgattgctattgatgagccagaacagtgtcatgctcatagcaatcgctgggtc
gaaaatgctgaggaacaatggagactgggggctgcagaagagtctagccaagtaccgaaa
attcatcggtcatttgatgactgtctggctgacattgccaaatttaaaacactatattta
tcggaactgtcagaggaaaatagtgggatcaatcttgctagccgatcgcttccagttacg
ccacaccagtttgctaaactagctgaaactatccgtcaagaacgcgatcgcaatttctcg
atctggctactttctgctcaaccttcgcgttctgtctcgctattgcaagaacatgattgt
ccggctcagtttatccccaatccccgcgactaccaagcgatagataagctgcaaattaac
catactcccatagccctaaaatattctggtcttgcggaactcgaaggttttattctgccg
acataccgaatagtaatcgttacagatcgggaattttttggacagcattctttggcgact
cccggctatatccgcaagcgccacaaagctacttccaagcaagttgatcctaataagctg
cgtccaggtgattatgtagttcacagaaatcatggtgttggcaaatttgtcaaactggaa
agtttgacgattaatgacgaaacccgtgattatttagtggtgcagtatgccgatgggtta
ttaagagttgccgccgatcaagtgggtgctttatcccggttccgcgccggaggtgataaa
gcaccggaactcaacaggatgaccggtaaagcttgggaaaataccaagaataaagttcgc
aaagccatcaaaaaattggcggtggacttgttgaaactgtatgcagcgcgatcgcaacaa
caaggttttagctttccaagtgatatgccttggcaggaagaactagaggattctttccct
taccaacccacaacggatcaactcaaagctgtacaagatgtcaaacgcgacatggaaagc
gatcgcccaatggatcgcttagtttgtggcgatgtcggttttggaaagacggaagtggcg
attcgtgctgtttttaaagcagtcaccgccgggaaacaagtggcactccttgcgccaacg
acaattttaacacagcagcattaccatacactcaaagaacgttttgcaccttacccggta
aatgtcggtttgctcaaccgttttcgttcggctgaagagcgccgcgatattcaaaagcga
ttggcaacgggtgaactagatgtagttgttggtacacagcaacttttgggtaaaggcgtg
atgttccgggatttaggactgttggtggtggatgaagaacagaggtttggggtaaaccag
aaagaaaaaattaaaagcctaaaaactcaagtggacgtgcttacactctccgctactccc
attccccggactttgtatatgtccttgtcgggaattcgggaaatgagtttaattactaca
ccacctccaaccagacgagcgattaaaacccatctgtcaccgataaattctgaaagtatc
cgcagtgcaattcgtcaagaattagatagaggtggacaggttttttatgtagttccgcga
gtggacgggattgaagaaaccacagccaatttacgagaagtgataccgggagctagattt
gcgatcgctcacggtcaaatggatgaaagcgagttagaatcaaccatgctcactttcagt
aatggcgacgcagacatcctcgtttgtacgacaattattgaatctggcttagatattcca
cgagtcaacaccattttaattgaagatgctcaccgctttggattggcacaactgtatcaa
ttacgcggtcgtgtgggacgtgcagggatacaagctcatgcttggttattttatcccaag
caacggcaattatctgatgcggcacggcaacgattacgagcaattcaagaatttactcag
ctaggttctggatatcagctagcaatgcgcgatatggaaatcagaggcgtgggtaacttg
ctaggtgcagaacaatccggtcaaatggatgccatcggctttgatttatacatggaaatg
ctggaagaagcaattcgggaaatccgaggacaagaaattccgaaagtggaagatacgcag
attgaccttaacctcacggcgtttatcccagcagattatattactgatttggatcaaaag
atgagtgcttatcgggcggtggcaacagctaaatctaaatcagaattaaatcagattgca
gccgagtggagcgatcgctatggtactttaccagtctctgcaaatcaacttttgcgagtt
atggaactcaaacagctagcgaaaaaactcggatttagccggattaaaccagaacaaaag
cagcacgtagttttagaaacgccgatggaggaacccgcttggaatttattggcggcgaat
ttaccagacaatctcaagacgcgctttgtgtattctccaggtaaagtcacagtgcgcggg
ttaggagtttttaaagcagatcaacaattgcagaatttgattgatgcttttgggagaatg
cagggtgcgattccagaggcagctgttgtttga
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