Novosphingobium resinovorum: BES08_17875
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Entry
BES08_17875 CDS
T04490
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BES08_17875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nre03400
]
BES08_17875
Enzymes [BR:
nre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BES08_17875
DNA repair and recombination proteins [BR:
nre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BES08_17875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DUF3809
Motif
Other DBs
NCBI-ProteinID:
AOR78794
UniProt:
A0A1D8A9J8
LinkDB
All DBs
Position
pSA1:complement(31308..33854)
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AA seq
848 aa
AA seq
DB search
MAAVPASGRSGKAGAPGADLLAEYNRKRDFAKTAEPAGKRSKTGGNAFIVQKHAARRLHW
DFRLDVDGVLKSWAVTRGPSADPDDKRLAVRTEDHPLSYGEFEGGIPKGEYGGGTVMLWD
RGTWAPIAGKSAKDIEDGHLHFTLDGERMKGEWLLVRMKPRPGEKRENWLLRKVKDAHAQ
TGDALVEQGLTSVLTGRTMAEIEADKGGTHSLKGKKGDAFAQVMEKAASRNARHKNRSRK
GAGKLPKFRPVQFATLVDTVPTGNLWMHEIKFDGYRALVAAAGGKVVVHTRSGLDWTDKF
GPLAAHIAALDLPPCLIDGELIARGTDGNPDFSSLQAVLKRGKGSQGEDQPLEFHAFDLL
ELDGENLAAMPNIERKERLEALLADAVPPIFVADHVIGAGETLYDAMCGAGQEGIIAKRI
DAPYRGRRTKDWVKVKCTRRQEFVIVGWAKSSAKGRPFSSLLLGQYEDKTLIYRGKVGTG
FDAEGLADMATRLEKLARKTPPLSVDKAEARGASWVTPKLVAEVAFAELTGEGRVRHGSF
LGLRIDKKARAVTPEKAQAPPRAEIAVKISNRERVIFPESGNSKGDLADYYAAVAPLMLP
FVTNRPISLVRCPQGRAKKCFFQKHDSGTFGEHVHHVPIREKDGGAEDYLYLNDAEGLLS
CVQMGTIEFHGWAARVDDVERPDRMIFDLDPDEGLDFKECIRAAGDIRARLADLGLVTFA
MLSGGKGVHVVVPLKRGHDWDTHKDFARRFAEAMSLAEPDRYVATMSKARRKGRIFIDWL
RNQRGATAVLPYSARSRDRAPVAVPVSWDELDGMKTAHPFSIGDAAELIRRSERLHGWGF
AEQRLPEI
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccgtgcccgcaagcgggcgtagcggcaaggccggcgcccccggcgccgacctt
ctcgccgaatacaaccgcaagcgcgacttcgcgaagaccgccgaacctgcgggcaagcga
agcaagaccggcggcaacgccttcatcgtgcagaagcatgcggcgcggcggctgcattgg
gatttccgactcgacgtcgatggtgtgctcaagtcctgggcggtgacccggggaccgagc
gccgatcccgacgacaagcgccttgccgtgcgcaccgaggaccaccccctgtcctacggc
gaattcgagggcggcatccccaagggcgaatacggcggcggtacggtgatgctctgggac
cggggcacctgggcgccgatcgcgggcaagagcgcgaaggacatcgaggacggccacctc
cacttcactctcgatggcgagcggatgaagggcgaatggctgctcgtgcgcatgaagccc
agacccggcgagaagcgcgagaactggttgctgcgcaaggtgaaggatgcccatgcgcag
acgggtgatgcactcgtcgaacagggcctcaccagtgtgctcaccggccgcaccatggcc
gagatcgaagccgacaagggcggcacccactcgctgaagggcaagaagggcgatgccttt
gcgcaggtcatggagaaggccgcctctcgcaatgcgcggcacaagaaccgctcccgcaaa
ggcgcgggcaagctgccgaagttccgtcccgtccagttcgccactctggtcgacaccgtg
cccaccggcaacctgtggatgcatgagataaagttcgacggctaccgcgcgctcgtcgcg
gcggcggggggcaaggtcgtggtccatacccgcagcggcctcgactggacggataagttc
ggcccgttggccgcgcatatcgccgcgctcgacctgccgccctgcctgatcgatggggag
ctcatcgcccggggcacggacggcaatcccgatttctccagcctccaggccgtactcaag
cgcggcaagggtagccagggcgaagaccagcccttggaattccacgccttcgatctcctc
gaacttgatggcgagaatctggcggcgatgcccaacatcgagcgcaaggaacggctggag
gcgctgctggctgatgccgtgccgcccatcttcgtcgccgaccacgtgatcggcgctggc
gagacgctctacgatgcgatgtgcggcgccgggcaggaagggatcatcgccaagcgcatc
gatgcaccctaccggggccgccgcacgaaagactgggtcaaggtcaagtgcacccggcgg
caggagttcgtcatcgtgggatgggcgaagtcgagcgcaaagggccggccattctcctcg
ctgctgctggggcagtacgaggacaagacccttatctatcgcggcaaggtgggcaccggc
ttcgacgcggagggtcttgccgacatggcgacaaggcttgaaaagctggcgcgcaagacc
ccgccgctgagcgtcgataaggcagaggcacgcggcgcaagctgggtcaccccgaaactg
gtggcggaagtggccttcgccgaactgaccggcgaaggccgcgtgcgtcatggcagcttt
ttgggcctcaggattgacaagaaggctcgggctgtcacgccggagaaagcgcaggccccg
ccacgggcggagattgccgtgaagatcagcaaccgcgagcgcgtgatcttccccgaaagc
ggcaactccaagggcgaccttgcggattactacgccgccgtcgcgccgctgatgctgccg
ttcgtgacgaaccggccgatcagtctcgtccgttgcccgcaaggccgggcgaagaaatgc
ttcttccagaagcacgacagcggcacgttcggcgaacacgtccatcacgtgccgatccgc
gaaaaggacggcggcgcggaggactacctctatctcaatgacgcagagggccttctctcc
tgcgtgcagatgggcacgatcgaattccacggctgggcggcaagggtcgacgacgttgaa
cgtcccgaccgcatgatcttcgacctcgaccccgacgagggattggatttcaaggaatgc
atccgagccgccggcgacatccgtgcccggctcgcggaccttggcctggtgaccttcgca
atgctgtccggcggcaagggcgtccatgtcgtcgtgccgctcaagcgcgggcacgactgg
gacacccacaaggacttcgcccgccgcttcgccgaagccatgagccttgccgagccggac
cgctacgtcgcgacgatgagcaaggccaggcgcaagggccgcatcttcatcgactggctg
cgcaaccagcgcggagcgaccgccgtgctgccctactccgcacgatcacgcgacagggct
ccggtcgcggtgccggtgagctgggatgaactggacgggatgaagactgcgcatcccttc
tcgattggcgatgctgcggagctgatcaggcggtccgaacgactgcatggctggggcttt
gccgagcagcggcttccggagatctga
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