Novosphingobium resinovorum: BES08_28015
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Entry
BES08_28015 CDS
T04490
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BES08_28015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nre03400
]
BES08_28015
Enzymes [BR:
nre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BES08_28015
DNA repair and recombination proteins [BR:
nre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BES08_28015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOR80675
UniProt:
A0A1D8AEY8
LinkDB
All DBs
Position
pSA2:complement(636022..639138)
Genome browser
AA seq
1038 aa
AA seq
DB search
MNLAFTALRIAQTLAERSIAFLADDEQQAEALAEAVRALAPQGHVVHVPSSDALPGDTAP
ATPANAGRRASALRALRLAQGTSIACILSGEAAARRYPAPDAFDSAPPTLHPGDEADTLA
FAIRLEELGYVADDRVDEPGEMAVRGEVIDIFPADAGGPARIELAAGRIAAIRSYDPGTQ
RTVGDLERLEIGRAAEPPIDEPTSILAHLTPGILALSDKADHRRRRFIQLARDAMGGAPH
RLDAIDDIAWKKDCKDWRPAPFDADFTPVPRFANERSPLTALVRFVKPLLAAGRRFVLAG
SARDLRFLRGKVVRRLSMEIVELDAWAALDDLPSGCGGSLTVPIDAGYVDERIVLVAAAD
LMGSRALIGVGGPTGANPWHVGIEVCSGDVVVHEDHGVGRVRGLEASPVGAGDDQSPIDR
IVLEYAGGARRLVPFDEADRIWRYGADGDAVSLDKLDGSSWDKRRAAINAAIDESAKALT
LLARERETLTAPVMVPDPAAYERFAGRFPFNETADQAGAIAAVRDNLASGRPMDRLVIGD
VGYGKTEVALRAAALAALAGFQVVVAAPTTVLVRQHLETFRRRFEGTKIEVAGLSRLSSA
AERKSVKAGLADGSTGIVVGTGAVMAKGVNYARPGLVVIDEEQRFGAADKARLRGLGTVH
VLSLSATPIPRTLQAALVGLQQMSLIATPPARRQPIRTSIGQYDDVLVRTALTREKARGG
QSFVVVPRIEDMAKVAAKIKRAAPDLVVVEAHGKMSAAEIDDVMVGFGAGRGDILLATNI
IEAGLDVPRANTMIVWRADRFGLAQLHQLRGRVGRGNRRGQVILLIEGEDAIAARTLKRL
RTLATFDRLGAGFAISGQDLDMRGAGDLVGDDQAGHMKLIGVDLYQHLLRVALKAARGED
AERWSPELNLGMSGVLPDSWIPEADLRLSLYLRLARIETEEALDAFDDELLDRFGTLPAE
AAMLLAHARIRLTARALRIARIDAGPAAIALTPRRDCPIDFAATGFAQSKGRWILAEALP
SEADRIVRVESLLDGFEC
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctggcgttcaccgcgctccgcatcgcgcaaaccctcgccgagaggtccatcgcc
ttcctggcggacgacgagcagcaggccgaggccctggccgaagccgtccgggcgctggcg
ccgcaagggcatgtcgtccacgtgccatccagcgacgcacttccgggggacacggctccc
gcgacgccggcgaacgcggggcgccgcgcgtcggcgctgcgggcccttcgcctggcgcaa
ggcacttccatcgcctgcatcctgagcggagaagccgcagcgcggcgctatcccgcgcct
gatgcgttcgatagcgccccgcccacgctgcaccccggggacgaggcggacaccctagcg
ttcgcgatacgactcgaagagctggggtatgtcgccgacgaccgcgtcgacgaaccgggc
gaaatggcggtgcgcggcgaggtcatcgatatctttcccgccgacgccggcggcccggcc
cgcatcgagctggcagcgggcaggatcgccgcgatccgctcgtacgatcccggcacgcag
cgcacggttggcgatctggagcgtctggagatcggccgcgccgccgaaccgccgattgac
gagccgacgtctatccttgcccacctgacgccgggtatactcgctctttccgataaagcc
gaccatcgccgcaggcgcttcatccagcttgcccgcgacgctatgggcggtgcgccccat
cgcctggatgcgattgacgacatcgcctggaagaaggactgcaaggactggaggccggct
ccgtttgacgcggacttcacgccggtgccgcggttcgccaacgagcgttcgccgcttacc
gcgctagtgcgcttcgtgaagccgctgctcgctgcgggacgcaggttcgtgctggcgggc
agtgcgcgagacttgcgcttcctgcgcggcaaggtcgtccggcgcctgtcgatggaaatc
gtggaactggacgcatgggcggcactggatgacctgccgtcaggctgcggcggcagcctg
acggtgccgatcgatgcaggatacgtcgacgagcgcatcgttctcgtcgcggcggcagac
ctgatgggcagtcgcgcattgatcggcgttggtggcccgaccggcgcgaacccgtggcac
gtcggcatcgaagtgtgcagcggcgacgtggtggtccacgaggaccatggcgtcgggcgc
gtgcgggggcttgaggcctcgccggtcggcgcgggcgacgaccagtccccgatcgacagg
atcgtgctcgagtatgcgggtggtgctcggcggctggtccctttcgatgaggccgaccgg
atctggcgatacggcgctgacggcgacgcggtgagcctggacaagctggatggctcatcc
tgggacaagcgccgcgcggcgatcaacgccgcgatcgacgagagcgcgaaggccctgacg
cttctggcgcgcgagcgcgagacgctgacagcgccggtcatggtgcccgatcctgccgcc
tacgaacgcttcgcgggccgcttccccttcaacgaaacggccgaccaggcgggagccatc
gcagccgtccgcgacaatctggcgagcggccggccaatggaccggctggtcatcggcgac
gtcggctatggcaagaccgaggtcgcgctgcgggccgcagctctggcggcgctggccggc
ttccaggtcgtggtcgccgcgccgaccaccgtcctcgtgcggcagcacctggagacgttc
cgccgccgcttcgagggaacgaaaatcgaggtcgccggcctgtcccggctgagcagtgcg
gcagaacgcaagtctgtgaaagcggggcttgccgatggctcgaccggtatcgtcgtgggc
accggcgcggtgatggcgaagggcgtgaactacgccaggccggggctggtcgtcatcgac
gaagagcagcgcttcggcgctgccgacaaggcccgtttgcgcggcttggggaccgtccat
gtcctgagcctgagcgccacgccgatcccgcgcaccctgcaggccgcgctggtgggcctg
cagcagatgtccctcatcgccacgcctcccgcccggcgccagccgatccgcaccagcatc
gggcagtatgacgatgtgctcgtccgcaccgcgctcactcgcgaaaaggcgcggggaggc
cagagcttcgtggtcgtgccgcgtattgaggacatggcgaaagtcgccgcgaagataaaa
cgcgcggcccccgatctggtggtggtcgaagcacacggaaaaatgtcagcggccgaaatc
gacgacgtcatggtcggctttggcgctggccggggggatatcctgctggcgaccaacatc
atcgaagcgggcctcgacgtgccgcgcgcgaacaccatgatcgtctggcgtgccgatcgc
ttcggcctggcacagctgcaccagctgcgcggccgcgtcgggcgcggcaaccggcgcggg
caggtgatcctgctgatcgaaggcgaggatgctatcgccgcgcgcacgctcaagcggctg
cgcacgctcgcgactttcgaccggctgggcgcgggtttcgcgatcagcggccaggacctc
gacatgcgcggcgcgggcgacctcgtcggcgatgatcaggccgggcacatgaagctgatc
ggcgtcgatctctaccagcatctgctccgtgtcgcgctgaaggccgcgcgcggcgaggac
gccgagcgctggagtcccgaactcaacctgggcatgagcggcgtgctgcccgacagctgg
attccggaggcggacctgcggctgtccctttacctgcggctcgcgcgcatcgaaaccgaa
gaggcgctcgatgcattcgatgatgaacttctggatcgcttcggaacgctgcccgccgaa
gcggcgatgctgctggcccatgcccgcatccgcctgaccgcgcgggctttgcggatcgcg
cgcatagacgcgggcccagccgcgattgcactcactccgcgccgcgattgcccgatcgac
ttcgccgccacgggcttcgcgcaaagcaagggacggtggatccttgccgaggcactgccg
agcgaagccgatcgtatcgtgcgcgtcgaaagcctgctcgacgggttcgaatgctga
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