Nocardioides rotundus: K8W59_03495
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Entry
K8W59_03495 CDS
T07669
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nro
Nocardioides rotundus
Pathway
nro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8W59_03495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nro03400
]
K8W59_03495 (mfd)
Enzymes [BR:
nro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8W59_03495 (mfd)
DNA repair and recombination proteins [BR:
nro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8W59_03495 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UAL31821
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All DBs
Position
732128..735733
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AA seq
1201 aa
AA seq
DB search
MADAREGTEPALDLTGPPALRPFVVAGLVGAGRTVLAVTVTSREAEDLVAELGSLVDPAT
VALYPSWETLPHERLSPRSDTVGQRLAVLRRLRHPGDDPANGPLSVVVAPIRSVLQPQVQ
GLADLTPVELATGDEQPIEAVVQSLVDAAYSRVDLVERRGEFAVRGGIVDVFPPTEEHPL
RVEFWGDEVEEIRSFSVADQRTLEPVGRLWAPPCRELLLTEEVRRRAAALGEANPQLLEL
TDKLAQGIAVEGMESLAPALVDEMELLVDLLPADTHVVVLDPERARSRAHDLVATSEEFL
GASWAAAASGGEAPIDLSGASYRTVSDVRSTVLGQGKSWWTLSPFGIADESEAGTSGADA
DADEGAVPSRQLAAVPAREYRGDVDAAIADVGRWAAGGLRVTTVHAGPGPAQRMVEALGE
RDVPARLVVSTGSTSEGGSTGEGGSTSEGGSTGEGGSTSEGGSTGEGEQWAPGVVTVTTG
TLAHGFLDEERGLVLLTGDDLTGQKASTRDMRAMPARRKQQVDPLELKAGDYVVHEQHGV
GRFVEMRQREVGGATREYLVLEYGASKRGGPPDRLYVPADSLDQVTRYVGGEQPSLDRLG
GGDWTKRKNRARRAVREIAAELIKLYAARQATKGHRFGPDSPWQRELEDAFPFVETPDQL
TTVDEVKSDMMQTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLVQQHF
STFTERMAGFPVEIRGLSRFQTEREAREVMAGLADGTVDIVIGTHRLLNPDVRVKDLGLI
IVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAVTGIREMSTITTPPEERHPV
LTYVGAYEDRQVIAAIRRELLREGQVFFIHNRVQSIEKAAARIRELVPEARVGVAHGQMG
EHQLEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERADTLGLSQLHQLRGRVGRS
RERAYAYFLYPAEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGH
IADVGFDLYVRLVGEAVADFKGDGGEELSEVRIELPVDAHLPHDYIPSERLRLEMYKRLA
EVRSDDDVDLLLAEMQDRYGEPPQEVASLLLVARFRARAREAGIGEVTIAGRNVRFAPVD
LPESRVLRLYPKSIVKPQLDTVLVPRPQTAKVGGRPLDGIALLEWARQVIDSVIDPREST
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcccgcgagggcaccgagcccgcgctcgacctcaccggccccccggccctg
cggccgttcgtggtggccggcctggtcggcgccggccgcaccgtgctggcggtgaccgtg
acctcgcgggaggccgaggacctggtcgccgagctcggctcgctggtggaccccgcgacg
gtggcgctctaccccagctgggagacgctgccgcacgagcggctctcgccccgcagcgac
accgtcggccagcggctcgccgtcctccggcgcctccggcaccccggcgacgaccccgcc
aacggcccgctctcggtggtcgtcgcgccgatccgctcggtgctgcagccgcaggtgcag
ggcctggccgacctgaccccggtcgagctcgccactggtgatgagcagccgatcgaggcg
gtcgtccagagcctcgtcgacgcggcgtactcccgggtcgacctggtcgagcggcgcggc
gagttcgccgtccgcggcggcatcgtcgacgtcttcccgccgaccgaggagcacccgctg
cgggtggagttctggggcgacgaggtcgaggagatccgctccttctccgtcgccgaccag
cgcaccctcgagccggtcggccggctgtgggcgccgccgtgccgggagctgttgctcacc
gaggaggtacggcgccgcgccgccgcgctgggcgaggcgaacccgcagctactcgagctc
accgacaagctcgcgcagggcatcgccgtcgagggcatggagtccctcgccccggcgctg
gtcgacgagatggagctgctggtcgacctgctccccgccgacacgcacgtggtcgtcctc
gaccccgagcgggcccgctcgcgcgcccacgacctggtcgccacctccgaggagttcctc
ggcgcctcgtgggccgccgccgcgagcgggggcgaggcgcccatcgacctcagcggcgcg
tcgtaccgcaccgtctccgacgtccgcagcacggtgctcgggcaggggaagtcctggtgg
acgctgagcccgttcggcatcgccgacgaatccgaggccggcacgtcaggcgcggacgcc
gacgccgacgagggcgccgtcccgtcccgtcagctggccgccgtgcccgcccgggagtac
cgcggcgacgtcgatgccgcgatcgccgacgtcggccgctgggccgccggcggcctccgg
gtcaccaccgtgcacgcgggacccgggccggcgcagcggatggtcgaggcgctcggggag
cgcgacgtgccggcgcggctggtggtctcgacaggctcgaccagcgaggggggctcgacc
ggcgaggggggctcgaccagcgaggggggctcgaccggcgaggggggctcgaccagcgag
gggggctcgaccggcgaaggtgagcagtgggcccccggcgtcgtcaccgtcaccaccggc
accctggcccacgggttcctcgacgaggagcgcgggctggtcctcctcaccggcgacgac
ctcaccgggcagaaggcctccacccgcgacatgcgcgccatgcccgcgcgccgcaagcag
caggtcgacccgctggagctcaaggccggcgactacgtggtgcacgagcagcacggcgtc
gggcggttcgtggagatgcggcagcgcgaggtcgggggcgcgacccgggagtacctcgtc
ctggagtacggcgcctccaagcgcggtggccccccggaccggctctacgtcccggccgac
agcctggaccaggtcacccgctacgtcggcggcgagcagcccagcctggaccggctcggc
ggcggcgactggaccaagcggaagaaccgcgcccgccgggcggtgcgcgagatcgccgcg
gagctgatcaagctctacgccgcccgccaggccaccaagggccaccggttcggcccggac
tccccgtggcagcgcgagctcgaggacgccttcccgttcgtcgagacgccggaccagctg
accaccgtcgacgaggtcaagtccgacatgatgcagacggtgccgatggaccggctggtc
tgcggcgacgtcggatacggcaagaccgagatcgccgtgcgggcggccttcaaggcggtg
caggacggcaagcaggtcgtcgtactcgtccccaccaccctgctggtgcagcagcacttc
tccaccttcaccgagcggatggccgggttcccggtcgagatccgcggcctgtcccgcttc
cagaccgagcgcgaggcccgcgaggtgatggccgggctggccgacggcaccgtcgacatc
gtcatcggcacccaccggctgctcaaccccgacgtccgggtcaaggacctcgggctgatc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagatgaagcggctgcgc
accagcgtggacgtgctctcgatgagcgccaccccgatcccgcggaccctggagatggcg
gtcaccggcatccgggagatgtcgaccatcaccacgccgccggaggagcggcacccggtg
ctgacctacgtcggggcgtatgaggaccggcaggtgatcgccgcgatccggcgcgagctg
ctgcgcgaggggcaggtcttcttcatccacaaccgggtgcagtcgatcgagaaggcggcc
gcccggatccgcgagctggtccccgaggcgcgcgtgggcgtggcgcacggccagatgggc
gagcaccagctggagcaggtgatgctggacttctgggagaagcgcttcgatgttctggtg
tgcaccaccatcgtcgagtccggcctggacgtctccaacgccaacacgatgatcatcgag
cgggccgacaccctcggcctctcccagctgcaccagctgcgcggccgggtcggccgctcc
cgggagcgggcctacgcctacttcctctacccggccgagaagccgctcaccgagaccgcc
cacgagcggctggccacgctggcccagcactccgacctcggcggcggcatggcgatcgcg
atgaaggacctggagatccggggcgccggcaacctgctcggcggcgagcagtccgggcac
atcgccgacgtcggcttcgacctctacgtccgtctggtgggggaggcggtcgccgacttc
aagggggacggcggcgaggagctctccgaggtccggatcgagctgccggtcgacgcgcac
ctgccgcacgactacatccccagcgagcgcctgcggctggagatgtacaagcgcctggcc
gaggttcgcagcgacgacgacgtcgacctgctgctggccgagatgcaggaccggtacggc
gagccgccgcaggaggtcgcctcgctcctcctggtcgcgcgcttccgcgcgcgggcccgc
gaggccggcatcggcgaggtcaccatcgccggtcgcaacgtccggttcgccccggtcgac
ctgccggagagccgggtgctgcggctctacccgaagtcgatcgtcaagccccagctcgac
accgtgctggtgccgcgcccgcagaccgcgaaggtcgggggccgtccattggatgggatc
gccctgcttgaatgggcccggcaggtgatcgactccgtgatcgacccgcgggagagcacc
gcctga
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