Nocardioides rotundus: K8W59_04420
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Entry
K8W59_04420 CDS
T07669
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nro
Nocardioides rotundus
Pathway
nro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K8W59_04420 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nro03400
]
K8W59_04420 (ligD)
Enzymes [BR:
nro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K8W59_04420 (ligD)
DNA repair and recombination proteins [BR:
nro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K8W59_04420 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UAL31843
LinkDB
All DBs
Position
911969..912883
Genome browser
AA seq
304 aa
AA seq
DB search
MLATPTEHVPPGEDWVHEVKWDGVRILLDAGPDRVRMLSRNGNVVTAAWPDVAAHQLGGR
DVLLDGEVIALNERGVPDFRVLQHRMHVRRANDAERLVERIPATYMVFDLLRLDGADVTA
RPLEERRALLEGLGLEATRWQVPAQYDDGAMLFDATLQQGLEGVVSKRRGSRYRLDTRSR
DWLKRAHRHRGSFVVGGWRPQEGTTNRLAALLVGEMTPDGLAYRGRVGSGIAGARARALQ
DLLEPLTRSDSPFADEVPRVDAAGTTWVEPRVVVDLDTHGLGYDRLRQPSYRGVRTDLAP
EDLG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgacgcccaccgagcacgtcccgcccggtgaggactgggtgcacgaggtgaag
tgggacggggtgcgcatcctgctcgacgccgggcccgaccgggtccggatgctcagccgg
aacggcaacgtggtgaccgccgcgtggccggacgtcgcggcgcaccagctcggcggacgc
gacgtactcctcgacggcgaggtgatcgccctcaacgagcggggcgtcccggacttccgg
gtgctgcagcaccggatgcacgtgcgccgggcgaacgacgcggagcggctggtggagcgg
atcccggcgacctacatggtcttcgacctgctgcgcctcgacggcgcggacgtgacggcg
cgaccgctcgaggagcggcgggcgctgctggaggggctgggcctggaggcgacccgctgg
caggtgccggcgcagtacgacgacggtgcgatgctcttcgacgcgaccctccagcagggg
ctcgagggcgtggtgagcaagcggcggggctcccgctaccgtctcgacacccgcagccgc
gactggctcaagagggcgcaccggcaccgcggctcgttcgtggtgggcggctggcggccg
caggagggtacgacgaaccggctggccgcgctgctggtgggggagatgacccccgacggg
ctggcctaccgcgggcgcgtcggcagcgggatcgccggggcccgcgcgcgggcgctgcag
gacctgctggagccgctgacgcgcagcgacagcccgttcgccgacgaggtcccccgggtc
gatgccgcgggaaccacctgggtggagccgcgggtcgtggtggacctggacacccacggg
ctgggctacgaccggctgcggcagccgtcctaccgcggggtccggaccgacctggcgccg
gaggacctgggctga
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integrated database retrieval system
