Nonlabens tegetincola: BST91_12815
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Entry
BST91_12815 CDS
T04875
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsd
Nonlabens tegetincola
Pathway
nsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BST91_12815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsd03400
]
BST91_12815
Enzymes [BR:
nsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BST91_12815
DNA repair and recombination proteins [BR:
nsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BST91_12815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARN72481
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All DBs
Position
2808559..2811903
Genome browser
AA seq
1114 aa
AA seq
DB search
MSYTSILERFKSLSQTNVLNDLVQDAKGYHTISGLNGSSYSMLIKVLFDQAEKPFLLICD
DKEQAAYFLNDLEQSIGEDHVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAV
IVTYPDALFEKVVTRKELEKNTLKISVGDQITVDFANEVLFEYEFKRVDFVTEPGEFSLR
GGILDVFSFSNDEPYRIEFFGNEIDSIRVFDVETQLSKEQVRKISIIPNVEHKKLEETRE
SFLKYLSNKTSIFAFHLELLYGRLDSLFAKAEQEYNNLQGEIRQLTPQEIFANSELIKKQ
LKEYNHFEFVANQGEIAFKTQPQPSFNKQFELLIENLETNKADGIKNYIFCGTAQQAKRF
HDIFDDMNATVEYETVVAPLYRGFISYDLRIACYTDHQIFERYHKFHLKNGYAKKQAITL
KELNSLEIGDYVTHIDHGIGKFGGLQKVDQNGKQQEAIKLIYGERDILYVSIHSLHKITR
FSSKDGKPPKIYKLGSPAWKKLKQKTKKKVKEIAFDLIKLYAKRKSKKGFQYAPDGYLQN
ELEASFIYEDTPDQSAATADVKADMESDKPMDRLVCGDVGFGKTEVAIRAAFKAAVNGKQ
VAVLVPTTILAFQHAKSFKERLSDLPVTVDYLNRFRTAKERRAVLDGLADGSIDIVIGTH
QLVNKSVRFKDLGLLIIDEEQKFGVAVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTPPPNRHPVETKVVRFSEEVIRDAVSYEISRGGQVFFVHNRIENIKEVAGMIQR
SVPDAKIGIGHGQMDGKKLEELMLSFMNGEFDVLVSTTIIESGLDVPNANTIFINNANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTDDARKRIQAIETFSDLGSGFNIAMKDLE
IRGAGDILGGEQSGFMNEIGFDTYQKILAEAISELKENEFKDLYIEDEVDKKHVTDVNID
TDFELLFPDDYINSITERLSLYSKLNEVENEDELENYRKELVDRFGELPDEAEDLLTSIR
IKWIAANMGLEKIVMKNGKFVGYFVSDQQSDFYQSPAFGKVLQAVQSHPRQFKMKEKQTR
AGLRLLLTIPDIKTVDKAFEALNKILPLPVNEKA
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatacttctatattagagcgttttaaaagcttatcacaaaccaacgttttaaat
gacctagttcaagatgcaaagggctatcatactattagtggattaaatggtagtagttat
tccatgttgataaaggttctttttgatcaggcagaaaaaccgtttttacttatatgtgat
gataaggaacaagcagcgtattttttaaatgatctagaacaaagtataggagaagatcac
gtgctattttatccaggtagttatcgcaggccttatcaaattgaggagacggacaatgcc
aatgtattgttacgagctgaggttctcaataggataaactcaagaaaaaagccagcggta
atcgtcacttatccagatgctttgtttgaaaaggttgtgactcgcaaagaacttgaaaaa
aatactcttaaaatttcggttggagatcaaatcaccgttgattttgctaatgaagtttta
ttcgagtacgagtttaaaagagttgattttgtgactgagccaggagaattttccctgaga
ggaggaatattagatgtgttctcttttagtaacgacgagccctatcgaattgagtttttt
ggaaatgaaatcgattccattcgagtttttgatgttgaaacccaattaagtaaggaacag
gttagaaaaatctctattattccaaatgttgagcacaaaaaacttgaagagactagagag
agttttcttaaatacctgtctaataagaccagtatttttgcgtttcacttagaactactc
tacggtcgattagactcgcttttcgcgaaagcggaacaagaatataacaatttgcaaggc
gaaatacgtcaattaactccacaggaaatttttgcaaattctgagcttatcaaaaagcag
cttaaagaatataatcactttgaatttgttgccaatcaaggagaaatagcattcaagaca
cagccacaaccatcttttaacaagcagtttgagttattgattgaaaatcttgaaactaac
aaagcagatggtatcaagaactatatcttttgtggtactgcacaacaagcaaaacgtttt
catgacatttttgacgacatgaatgctaccgttgagtatgaaaccgtagtagctccttta
tatcgtggatttataagttatgatttgcgtattgcatgttataccgatcatcaaatattt
gaacgatatcataagtttcatctcaaaaatggatacgcaaaaaaacaagcgattacctta
aaagaacttaactcgcttgagattggagattatgttactcatattgaccatggaataggg
aaatttggtggattacaaaaggtcgatcaaaatggtaaacaacaagaggccattaaatta
atttacggtgaacgagatatcttgtatgtatcaattcattccttacataaaattacccga
ttttcaagtaaagatggtaaaccaccaaaaatttacaaattaggtagtccagcctggaag
aaactgaaacaaaaaactaagaaaaaggtaaaggaaattgcttttgatcttatcaaactt
tacgcaaaacgtaaatcaaaaaaaggatttcagtatgctccagatggttatttgcaaaat
gaactcgaggctagttttatctatgaagatacaccagatcaaagtgcagccaccgccgat
gtaaaggctgacatggaaagcgataagccaatggatagattggtttgtggtgatgtaggt
tttggtaagacagaggtagctataagagctgcctttaaagcagcggttaatggaaaacaa
gtcgctgttcttgtacctacaactattttagcttttcagcatgctaaatcttttaaagaa
cgattgtcagatttacctgttacggtagattacttaaaccgtttcagaacagcaaaagaa
cgtcgggcggttcttgatggactagccgatggaagtatcgatatcgtaataggaacccat
caactggtaaataaatctgttcgttttaaggatctcggacttttaattattgatgaggag
caaaaatttggagttgcagtaaaagataaattaaagacccttaaagaaaatatcgatacg
ctcacgttaacagcgacacctattcctagaacacttcagttctcattaatggctgctcgt
gatttaagtgttataaaaacaccaccgcctaatagacatcctgtcgaaacaaaggtggtt
cgttttagtgaagaggtaattcgtgatgctgtgagttatgaaatctcaagaggcggacaa
gtgttttttgtccataatcgaatcgagaatataaaggaagtagcaggaatgattcaaaga
tctgtacccgatgcaaaaattggtataggtcatggtcaaatggatggtaaaaaattagag
gaactcatgctttcatttatgaacggtgagtttgatgttcttgtttcaacaaccataatt
gaaagtggtctggatgtcccaaatgctaatacgatttttataaataacgctaataacttt
ggcttgtctgatctacatcaaatgagaggtagagtagggcgtagtaataaaaaagccttt
tgttacttcataacgccaccctatgaggttatgactgatgacgcacgtaaacgtattcag
gcaattgaaacattttctgatttaggaagtggtttcaatatcgcaatgaaagatcttgaa
atacgtggagctggagacattttaggtggtgaacaaagcggttttatgaatgaaattggt
tttgatacctatcaaaaaatccttgccgaagctatttctgaattaaaagaaaatgaattc
aaggatctttatattgaggatgaagtagataaaaaacatgttactgatgtcaatatagat
actgattttgaattattatttccagatgattatatcaactccattacagaaagattatcg
ctttattcaaaattgaatgaggtggaaaacgaggatgagttagaaaattatcgaaaagaa
ttagtagatcgttttggagaattaccagatgaagcagaagacttacttacaagtattcgt
ataaagtggattgctgctaatatggggcttgaaaaaatcgtcatgaaaaatggaaaattt
gtaggctactttgtaagtgatcaacaaagtgatttttatcaatcaccagcatttggaaag
gtgttacaagcagttcaatctcatcctagacaatttaagatgaaggagaaacaaacaaga
gctggattacgtttattactcactataccagatattaaaacagttgataaagcatttgaa
gctttaaataaaatattaccattgcctgtcaatgaaaaagcttaa
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