Neisseria shayeganii: H3L94_08320
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Entry
H3L94_08320 CDS
T07084
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsg
Neisseria shayeganii
Pathway
nsg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3L94_08320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsg03400
]
H3L94_08320 (mfd)
Enzymes [BR:
nsg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L94_08320 (mfd)
DNA repair and recombination proteins [BR:
nsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3L94_08320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QMT39865
UniProt:
A0A7D7N2J8
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All DBs
Position
complement(1697462..1701073)
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AA seq
1203 aa
AA seq
DB search
MSPFPIPAPAQKSRWLGLSRGSLPLMLTECLPEQPVKIILTQDVEQALRLQTAWQFFRPQ
DNAVFLPDWETLPYERFSPHQDLVSERLSALWQLKNGQADVLVVPVATAMQKLAPVSFLL
GRTFWLKTGQTLDIDALRENLIEAGYSHVSNVIAAGEFAVRGGILDIFPMGAELPYRLDM
FGDEIDSIKTFDPDTQRTLAPVSEIRLLPAHEFPTDDDAQKIFRSRFREEIEGDYNAAAV
YKAVSNGHFGAGVEYYLPLFFENECATLFDYIGEEAVVVCLGDVHTEAARFWADVKTRYA
MAQGDDAYPPLHPQHLYLSEDQFAGRLKPYPQILPDFHGKQHQLPDVAVNRQSETPLAAL
HGFQTAFEGRILLCAESAGRRETMLGFFAQHGLKPKSVDGWQAFLNSDAPLCIAVTQLAY
GFQLPSENAGGVSESAEAVGRIPESDKTQSAQMSDTSIRPTEAHFSDGLSGSLPIDAEPV
GRILESDKTQSAQMSRPTTGLAVITESDLYQYVARSRTARRKKHAQVSDGLLRDLAEINI
GDPVVHEEHGIGRYMGLVSMDLGEGSTEMMLLEYANEAQLYVPVSQLHLISRYSGHAYEN
VQLHRLGTAAWSKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFQFNELDYQAFSDGFGY
EETEDQAAAIAAVLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTT
LLVEQHAQNFSDRFADFPVKVAQLSRFNSSKETKATLAGMADGTVDIVIGTHKLVQDDIQ
FKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFSLITTA
PSRRLAVKTFVKPFSEASVREAVLRELKRGGQVFFLHNEVETIENMRERLQELLPEARIG
VAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPEYITKDAEKRLDAISAADELGAGFTLAMQDLEIRGAGEILGE
GQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPESYCPDIH
ERLVLYKRLATCETKGQINSVHEELVDRFGLPEQPVKTLIESHRIRLTAKEMGIDAIDAT
SDAVTLTFGKHHNIDPAQIILLMQSNKNYRMAGADKLRVSAVMEDVETRIQTVKAVLKKL
GEK
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgtttcccatccccgcccccgcccaaaaatcccgctggctcggcctttcgcgc
ggcagcctgcctttgatgcttaccgaatgcctgcctgaacaacccgtaaaaatcattctc
acgcaagatgtggagcaggccttgcgcctgcaaaccgcgtggcagtttttccgcccgcag
gataatgcggtgtttctgcccgattgggaaacgctgccctacgaacgtttttcgccgcat
caggatttggtttcggagcggctttctgccttgtggcagctgaaaaacgggcaggccgac
gtgttggtggtgccggtggccaccgccatgcagaagctcgcgccggtgtcgtttctgctc
gggcgcacgttttggctgaaaacgggtcaaacgctcgatatcgacgcgttgcgcgaaaac
ttgattgaagcgggttacagccatgtttccaacgtgattgccgccggcgaatttgccgtg
cgcggcggtattttggatatttttccgatgggcgcggagttgccctaccgcctcgatatg
ttcggcgatgaaatcgacagcatcaaaactttcgatcccgacacccagcgcacgcttgct
ccggtaagcgaaatccgcctgctgcccgcgcacgagttccccaccgatgacgacgcgcaa
aaaatcttccgcagccgtttccgcgaagaaatcgagggcgactacaacgccgccgccgtg
tacaaagccgtgagcaacggccatttcggtgcgggcgtggaatattatctgccgctgttt
tttgaaaacgaatgcgccacattgtttgactatatcggcgaagaagccgttgtcgtgtgc
ctcggcgacgtacacaccgaagctgcgcgcttttgggcggacgtgaaaacccgctatgcg
atggcgcagggcgatgatgcttacccgcctttgcatccacagcatttgtatctcagtgaa
gaccagtttgcaggccgtctgaaaccttatccgcaaattctgcccgactttcacggcaag
cagcaccaattgcccgatgtggccgtgaaccgccaatccgaaaccccgctcgccgccctg
cacggttttcagacggcctttgagggcaggattctgttgtgcgccgaaagcgcaggccgt
cgcgaaaccatgctcggcttttttgcccagcacggtctgaaaccgaaaagcgtggacggc
tggcaggcgtttttaaacagcgatgcgccgctgtgcattgccgtcacgcagttggcgtac
gggtttcagctgccgtctgaaaacgcgggcggtgtttccgaatcggccgaagccgtaggt
cggattcccgaatccgacaaaacgcaatcggcacaaatgtcggatacaagtatccgacct
acggaagcccatttttcagacggcctttcaggtagcctgcccattgatgcagaacccgta
ggtcggattctcgaatccgacaaaacacaatcggcgcaaatgtcgcggcctacaaccggc
ctcgccgtcatcaccgaatccgacctctaccaatacgtcgcccgcagccgcaccgcacgc
cgcaagaagcacgcccaagtttcagacggccttttgcgcgatctggccgaaatcaacatc
ggcgaccccgtggtacacgaagagcacggcatcggccgctatatgggcttggtcagcatg
gatttgggcgaaggcagcaccgaaatgatgctgctcgaatacgccaacgaagcccagctt
tatgtgcccgtgtcgcagctgcacctgatcagccgctattccggccatgcctatgaaaac
gtgcaactgcaccgcttgggcaccgcagcatggagcaaagccaaacgcaaagccgccgaa
aaagcccgcgacaccgccgccgaactgctcaatctctacgcccaacgcgccgcacaagaa
ggctttaaattccagtttaacgaattggactaccaagccttttcagacggcttcggctac
gaagaaaccgaagaccaagccgccgccatcgccgccgtactcaaagaccttacccaaggc
aaaccgatggacaggctagtgtgcggcgatgtcggcttcggcaaaaccgaagtcgccttg
cgcgccgccttcgtggccgtgatgggcggcaaacaagtggccgtactcgcccccaccacg
ctgctggtggaacaacacgcacaaaatttcagcgaccgcttcgccgattttcccgttaaa
gtcgcccagctttcccgcttcaacagcagcaaagaaaccaaagccacgctcgccggtatg
gctgacggcacagtcgatatcgtcatcggcacgcacaaactcgtgcaagacgacatccaa
ttcaaaaacttaggcttggtgattatcgacgaagaacaccgcttcggcgtgcgccaaaaa
gagcaactcaaacgcctgcgcgccaacgtcgatatcctcacccttaccgccacccccatt
ccgcgcaccctcagcatggcactcgaaggcttgcgcgatttctcgctcatcaccaccgca
cccagccgccgtttggccgttaaaaccttcgtcaaacccttcagcgaagccagcgtacgc
gaagccgtgctgcgcgaactcaaacgcggcgggcaagtattctttttgcacaacgaagtc
gaaaccatcgaaaacatgcgcgaacgcctgcaagagctgctgcccgaagcccgcatcggt
gtcgcccacggccaattgcgcgagcgcgaactcgaacaagtgatgcgcgacttcctgcaa
cagcggttcaacctgctgctgtgttccaccatcattgaaaccggcatcgacatccccaac
gccaacactatcatcatcaaccgcgccgacaaattcggccttgcccaactgcaccaattg
cgcgggcgcgtcggccgcagccaccaccaagcctacgcctacctgcttacacccgaatac
atcaccaaagatgccgaaaaacgcctcgatgccatttccgccgccgacgaactcggcgca
ggttttacccttgccatgcaggatttggaaatccgcggtgccggcgaaatcctcggcgaa
gggcaaagcggcgaaatgatgcaggttggcttcactctctacaccgaaatgttaaaacaa
gccgtgcgcgacctcaaaaaaggccgccagcccgacctcgacgcaccgctgggcgtaacc
accgaaatcaaactgcacagccccgcgctcttgcccgaaagctactgccccgacatccac
gagcggctagtgctctataaacgcctcgccacctgcgaaaccaagggccaaatcaacagc
gtgcacgaagaactcgtcgaccgcttcggcctgcccgaacaacccgtcaaaaccctaatc
gaaagccaccgcatccgcctgacggccaaagaaatgggcatagacgcaatcgatgccacc
agcgacgccgttacccttaccttcggcaaacaccacaacatcgaccccgcgcagattatc
ctactgatgcaaagcaacaaaaactaccgcatggccggcgcagacaaattgcgcgtaagc
gcggtgatggaagatgtggaaacaaggattcagacggtgaaagcggttttgaagaaattg
ggggagaagtaa
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