Nostoc sphaeroides: GXM_05454
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Entry
GXM_05454 CDS
T06325
Name
(GenBank) mfd, transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsh
Nostoc sphaeroides
Pathway
nsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXM_05454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsh03400
]
GXM_05454
Enzymes [BR:
nsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXM_05454
DNA repair and recombination proteins [BR:
nsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXM_05454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
PsbQ
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFS47962
UniProt:
A0A5P8W5T0
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All DBs
Position
Gxm1:complement(4920116..4923712)
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AA seq
1198 aa
AA seq
DB search
MSFSSIVRALARSPLTTEFISKLNRQQELRLNGVPRLPKGLVASALAQATGKDLFVVCAT
LEEAGRVYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMSWGQMQVLADLVTGDRGLGTG
DWGLGGQEGTIEKVTPLSVPNPQFPIPSTGAKRPLAIVATQGALQPHLPPPEAFGQFCLT
LKRGMELDLNSFSEKITILGYERVPLVETEGQWSRRGDIVDVYPVSSEFPVRLEWFGDEI
EQMREFDPATQRSALDKVDQLILTPTSFAPIVMAALKNSYELGVMSDELNSESELSTEKS
SLLEGSRRFLGLAFEQPASLLNYLSENTLIAIDEPEQCHAHSDRWVENAEEQWEIGHGEE
STPLRLPKIHRSFDECLADVAKFKTLYLSELSEENDGINLASRPVPVTPHQFAKLAETIR
QERDRNFSIWLLSAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHTPIALKYSGLA
ELEGFILPTYRIVIVTDREFFGQHSLATPGYIRKRHKATSKQVDPNKLRPGDYVVHRNHG
VGKFVKLESLTINNETRDYLVVQYADGLLRVAADQVGALSRFRAAGDKAPELNRMTGKAW
ENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSFPGDMPWQEELEDSFPYQPTTDQLKAVQ
DVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQVALLAPTTILTQQHYHTLK
ERFAPYPVNVGLLNRFRSAEERRDIQKRLATGELDVVIGTHQLLGKGVTFRDLGLLVVDE
EQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIKTHL
SPINSESIRTAIRQELDRGGQVFYVVPRVDGIEETTANLREVLPGARFAIAHGQMDESEL
ESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQA
HAWLFYPKQRALSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAI
GFDLYMEMLEEAIREIRGQEIPKVEDTQIDLNLTAFIPADYITDLDQKMSAYRAVATAKS
KSELKQIAAEWSDRYGSLPVPANQLLRVMELKQLAKKLGFSRIKPENKQHVVLETPMEEP
AWNLLAANLPDNLKTRFVYSPGKVTVRGLGVFKADQQLQNLIDAFGRMQGAIPEAAVV
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttctattgtgcgtgccttagcgcgatcgccgctcaccactgaatttatt
tctaagctaaaccgacaacaagaattgcggttaaatggcgttcctcgactacccaagggt
ttggtggcttcggcattggcacaggctacgggcaaggatttgtttgtggtttgcgccact
ctggaagaagctggacgcgtttatgcacaactggaggcaatgggatggcaaacagtacat
ttttaccccacctccgaggcttctccctacgaaccttttgacccggaaactgagatgagt
tgggggcaaatgcaggtattggcagatttggtaacaggggataggggactggggactggg
gactggggattaggaggacaagagggaactattgaaaaagttactcccttgtctgttccc
aatccccaattcccaattcccagtaccggagcgaagcgacctttggcaattgtggctacc
caaggggcgctacaaccccacttaccaccaccagaagcttttgggcaattctgtctgact
ttgaagcgggggatggaattagacttgaattccttcagtgaaaaaataactattctgggg
tacgaacgagtacctctggtggaaacagaaggacagtggagccgacggggcgatattgtt
gatgtgtacccagtttcatctgagtttccagtccggctggaatggtttggtgatgaaatc
gagcaaatgcgggaatttgacccagcaacccaacgttccgccctcgacaaagttgatcag
ttaattcttacccccactagctttgctcccatcgtcatggcggcgctgaagaatagttat
gagttaggagttatgagtgatgagttaaattctgagtcagaacttagcactgagaagtca
tcacttttggagggtagtcgtcgctttttggggttggcttttgagcaaccagcatctttg
ctaaactatttatcagaaaataccctgattgccattgatgagcctgaacagtgtcatgct
catagcgatcgctgggtggaaaatgccgaggaacagtgggaaattgggcatggggaagaa
tctactcccctaagattgccgaaaattcatcggtcgtttgatgagtgtttggctgatgtt
gccaagtttaaaacattatatttatcggaattatcagaggaaaatgatgggattaatctt
gccagccgtcctgttcctgtcacgccgcaccagtttgctaaactagctgaaactatccgc
caagaacgcgatcgcaatttctcaatctggctactttctgctcaaccttcgcgttctgtc
tcactgttgcaagaacatgactgtccggctcagtttatccccaatccccgcgactaccaa
gcgatcgataagctgcaaattaaccatactcccatagccttaaaatattctggtcttgcg
gaactagaaggttttatcctgcctacttaccgaatagtaatcgtcacagatcgggaattt
tttgggcagcattctttggcgactcccggctatatccgcaagcgtcacaaagctacttct
aagcaagttgatcccaataaactccgtccaggcgattatgtggttcatagaaatcatggt
gttggcaaatttgtcaagctggaaagtttgacaattaataatgaaacccgtgattatttg
gtggtgcagtatgctgatgggttattaagagtcgcagccgatcaagtaggtgctttatct
cggttccgcgccgcaggtgataaagcgccggaactcaatcggatgactgggaaagcttgg
gaaaataccaagaataaagtccgcaaagcgattaaaaaattggcggtggacttgttgaaa
ctgtatgcagcgcgatcgcaacaacaaggttttagctttccaggagatatgccttggcag
gaggaattagaagattctttcccctaccaacccacaacggatcaactcaaagctgtacaa
gatgtaaaacgcgacatggaaagcgatcgcccaatggatcggttagtttgtggcgatgtc
ggttttggcaagacggaagtggcgattcgtgctgtttttaaagcagtcaccgccggtaaa
caagtggcactccttgcgccaacgactattttaacacagcagcattaccatacactcaaa
gaacgttttgcaccttacccggtaaatgtcggtttgctcaaccgttttcggtctgctgaa
gaacgccgcgatattcaaaaacgattggcaacgggtgaattagatgtagtaattggtaca
caccaacttttaggtaaaggcgtgacattccgggatttaggattattagtagtggatgaa
gaacaacgatttggggtaaaccaaaaagagaaaattaaaagcctgaaaactcaggttgat
gtgcttaccctctcagccactcccattccccggactttgtatatgtccttgtcgggaatt
cgggaaatgagtttgattaccacgccacccccaactagacgaccaattaaaacccatctt
tcaccgataaattctgaaagtatccgcaccgcaattcgtcaagaattagacagaggcgga
caggtattttatgtagttccacgagtagatggcattgaagagacaacagccaatttacga
gaagttttaccaggagctagatttgcgatcgctcacggtcaaatggatgaaagcgagtta
gaatcaaccatgctcactttcagcaatggcgatgcagatatcctggtttgtacaacaatt
attgaatctggcttagatattccgcgagtcaacaccattttaattgaagatgctcaccgc
tttggattagcacagttgtatcaattacgcggtcgtgtgggacgtgcaggcatccaagct
catgcttggttattttatccaaagcaacgggcattatctgatgcagcacggcaacgatta
cgagcgattcaggaatttactcagttgggttctggatatcaactagcgatgcgtgacatg
gaaatcagaggtgtaggtaacttgctaggtgcagaacaatccggtcaaatggatgccata
ggttttgatttatacatggaaatgctagaagaagcaattcgggaaatccgaggacaagaa
attccgaaagtggaggatacccaaattgacctcaacctgacggcgtttattccggcagat
tatatcaccgatttggatcaaaagatgagtgcataccgggcagtggccacagctaaatct
aaatcagaattaaaacagattgcagccgagtggagcgatcgctatggtagtttacctgtc
cctgcaaatcaacttttgcgagtcatggaacttaaacagctagcgaaaaaactcggattt
agccgaattaaaccagaaaacaagcagcacgttgttttagaaacaccgatggaggaaccc
gcttggaatttgttagcggcgaatttaccagacaatctcaagacgcgttttgtctattct
cctggtaaagtgacggtgcgcggattaggagtatttaaagcagatcaacaattgcagaat
ttgattgatgctttcgggagaatgcagggtgcgattccagaggcagctgttgtttga
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integrated database retrieval system
