Nocardioides seonyuensis: EXE58_03410
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Entry
EXE58_03410 CDS
T06627
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsn
Nocardioides seonyuensis
Pathway
nsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EXE58_03410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsn03400
]
EXE58_03410 (mfd)
Enzymes [BR:
nsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXE58_03410 (mfd)
DNA repair and recombination proteins [BR:
nsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EXE58_03410 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBX57425
UniProt:
A0A4P7IJ63
LinkDB
All DBs
Position
complement(679966..683634)
Genome browser
AA seq
1222 aa
AA seq
DB search
MGGGGLSAFLPQRPSRQTSGPPVDSGHVTPPPPPDPVPGASSPLARVADALLAGPVLSEA
LAQSGVLPSLDLTGPAAVRPFVVRGLVERGRTVLVVTATSRDAEDLVEELSDLVDPALVA
HYPSWETLPHERLSPRSDTVGRRLAVLRRLKHPGDDPSNGPLRVVVAPIRSVLQPQVKGL
ADIEPVELARGDARPLEEVVQGLAAAAYSRVDMVEKRGEFAVRGGIVDVFPPTEEHPLRV
EFWGDEVEEIRSFAVADQRTHEQVERLWAPPCRELLLTDEVRRRAAELGEAHPQLLELTD
KVAAGIAVEGMEALAPVLVEEMELLVDLMPADTTVLVLDPERARSRAHDLVATSEEFLGA
SWAAAAGGGTAPIDLGAASYREVADVRSHALGLGMAWWSVSPFGIDTDDLPADLAADGVP
SRALTAQPAEAYRGDLEKAISDIRGWLDQGLAVTVVHAGHGPAQRFVELLADHDVAARLV
EEGASAEGVVTVTCGSLVHGLVDPAARVALVTGDDLSGQKSSTRDMRKMPARRKKQIDPL
ELKAGDYVVHEQHGVGRFVEMAQREIGGATREYLVLEYGASKRGGPPDRLFVPADTLDQV
TRYVGGEQPSLDRLGGGDWTKRKNRARRAVREIAAELIKLYAARQATRGHAYGPDTPWQR
ELEDAFPFTETADQLTTVEEVKADMRQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQ
VAVLVPTTLLVTQHLSTFSERMSGFPVVVKGLSRFQTDKEAKEVVAGLADGSVDIVVGTH
RLLNPDIKVKDLGLIIVDEEQRFGVEHKEQMKRMRTSVDVLSMSATPIPRTLEMAVTGIR
EMSTITTPPEERHPVLTYVGAYEDRQVVAAVRRELLREGQVFYIHNRVNSIEKAAARIRE
LVPEARVATAHGQMGEHQLEQVMLDFWEKRFDVLVCTTIVESGLDVSNANTMIIERADTL
GLSQLHQLRGRVGRSRERAYAYFLYPAEKPLTETAHERLATLAQHSDLGGGMAIAMKDLE
IRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFKGGVEEELKEVRIELPVDAHLPHDY
IPSERLRLEMYKRLAEVRADSDIDEVREELVDRYGNPPEVVDSLLLVARFRARARRAGVS
EVTIAGKYVRFAPVDLPDSRVVRLQRLHPGSVVKAPVSTILVPRPQTAAVAGKPVGGVAL
LEWARGVLDSIVDPEDARPKNP
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggggggtggtggtctgagcgccttcctaccccagcgcccctcgcggcaaacctccggc
ccacccgtagactcaggccacgtgactccgccgcccccgcccgacccggttccgggggcc
tcttctcctctggcccgggtcgcggacgccctcctcgccggtccggtcctctccgaggcc
ctggcccagagcggcgtcctgccctccctcgacctcaccggtcctgctgcggtgcggccc
ttcgtggtgcgcggcctggtcgagcgcggacgcacggtcctggtcgtcaccgccacgtcc
cgtgacgccgaggacctcgtggaggagctctccgacctggtcgacccggcgctggtggcg
cactaccccagctgggagacccttccccacgagcggctcagcccccgcagcgacacggtg
ggacggcgcctggccgtcctgcgccgtctcaagcaccccggtgacgacccctccaacggt
ccgctgcgcgtggtcgtcgcgccgatccggagcgtgctgcagccgcaggtcaaggggctc
gccgacatcgagccggtcgagctggctcggggcgacgcccgtccactcgaggaggtcgtg
caggggctggccgcggcggcctactcccgggtcgacatggtcgagaagcgcggcgagttc
gcggtccgcggcggcatcgtcgacgtcttccccccgaccgaggagcatccgctgcgcgtg
gagttctggggcgacgaggtcgaggagatccgcagcttcgcggtggccgaccagcgcacg
cacgagcaggtcgaacggctctgggcgccgccgtgtcgcgagctgctgctgaccgacgaa
gtacgacgccgtgccgccgagctcggcgaggcccacccgcagctcctcgagctcaccgac
aaggtcgccgccggcatcgccgtggagggcatggaagcactcgccccggtcctggtcgag
gagatggagctcctggtcgacctgatgccggccgacaccaccgtgctggtgctcgacccc
gagcgcgcccgcagccgagcccacgacctggtggcgaccagcgaggagttcctcggggcg
tcgtgggccgcggcggcaggtggtggaaccgcgccgatcgacctgggggccgcgtcctac
cgcgaggtcgccgacgtccgcagccacgccctcggcctggggatggcctggtggtcggtg
agcccctttggaatcgataccgatgacctgcccgccgaccttgccgccgacggcgtaccg
agccgtgccctgaccgcacagccggccgaggcctaccgcggggacctcgagaaggcgatc
agcgacatccggggatggctcgaccaggggctggccgtcacggtggtccacgcaggccac
ggccccgcgcagcgcttcgtggagctcctcgccgaccacgacgtggctgcgcggctggtg
gaggagggggcctcagccgagggcgttgtcacggtcacgtgcggcagcctcgtccacggc
ctcgtcgatccggctgcccgcgtagcgctcgtcaccggcgacgacctctcgggccagaag
tcctccacccgtgacatgcgcaagatgcccgcgcggcggaagaagcagatcgacccgctc
gagctgaaggccggcgactacgtcgtccacgagcagcacggagttggccgcttcgtcgag
atggcgcagcgcgagatcggcggcgcaacgcgcgagtacctcgtgctggagtacggcgcc
agcaagcgcggtgggcccccggaccggctcttcgtgccggccgacaccctcgaccaggtc
acccgctacgtcggtggcgagcaaccgtccctcgaccggctcggtggcggcgactggacc
aagcgcaagaaccgcgcccgccgcgcggtgcgcgagatcgcggccgagctgatcaagctc
tacgccgcccggcaggcgaccaggggccacgcctacggcccggacaccccgtggcagcgc
gagctggaggacgcgttcccgttcaccgagacggccgaccagctgaccaccgtcgaggag
gtcaaggccgacatgcgccaggtcgtgcccatggaccggctggtctgcggcgacgtgggc
tacggcaagaccgagatcgccgtccgggccgccttcaaggccgtgcaggacggcaagcag
gtcgccgtgctcgtgcccacgacactgctggtgacccagcacctgtcgacgttcagcgag
cggatgagcggcttccccgtcgtggtgaagggcctctcgaggttccagaccgacaaggag
gccaaggaggtcgtcgccggcctcgccgacggctctgtcgacatcgtggtcggcacccac
cggctcctcaaccccgacatcaaggtgaaggacctcggtctcatcatcgtcgacgaggag
cagcgcttcggagtcgagcacaaggagcagatgaagcgcatgcgcacctccgtcgacgtg
ttgtcgatgagtgccacgccgatcccgcgcaccctcgagatggccgtgacgggcatccgc
gagatgtcgacgatcaccacccctccggaggagcgccaccccgtcctcacctacgtgggc
gcctacgaggaccggcaggtcgtcgcagcggtgcggcgtgagctcctgcgcgagggccag
gtgttctacatccacaaccgggtcaactccatcgagaaggccgccgcgcggatccgcgag
ctcgtccccgaggctcgggtggccacggcccacgggcagatgggggagcaccagctcgag
caggtgatgctcgacttctgggagaagcgcttcgacgtcctcgtctgcaccaccatcgtg
gagtccggtctcgacgtctccaacgccaacacgatgatcatcgagcgtgccgacaccctc
gggctctcccagctccaccagctccgcggacgcgtcggccgctcgcgcgagcgcgcctac
gcctacttcctctacccggcggagaagccgctgaccgagaccgcacacgagcggctggcg
accctggcccagcactcggacctcggcggcggcatggcgatcgcgatgaaggacctcgag
atccgtggcgccggcaacctgctcggaggcgagcagtccggccacatcgccgacgtcggc
ttcgacctctacgtcaggctcgtcggcgaggccgttgccgagttcaagggcggggtcgag
gaggagctcaaggaggtgcgcatcgagctgcccgtcgacgcccacctgccgcacgactac
atcccgagcgagcggctgcggctggagatgtacaagcgtctcgccgaggtccgcgccgac
agcgacatcgacgaggtccgcgaggagctggtcgaccgctacggcaaccccccggaggtg
gtggactccctgctcctggtcgccaggttccgggcacgggcgcgccgggccggcgtcagc
gaggtgacgatcgcgggcaagtacgtcaggttcgcccccgtcgacctccccgactcgcgc
gtcgtacgcctccagcggctccatcccggcagcgtggtcaaggcgccggtcagtacgatc
ctggtgccgcggccccagaccgcagcggtcgccggcaagccggtcggtggggtggcactg
cttgaatgggcgcgcggtgtgctcgactccatcgtggatcccgaggacgcccgaccgaag
aacccatga
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