Niabella soli: NIASO_02455
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Entry
NIASO_02455 CDS
T03682
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nso
Niabella soli
Pathway
nso03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NIASO_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nso03400
]
NIASO_02455
Enzymes [BR:
nso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NIASO_02455
DNA repair and recombination proteins [BR:
nso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NIASO_02455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHF14349
UniProt:
W0EYS4
LinkDB
All DBs
Position
complement(548869..551406)
Genome browser
AA seq
845 aa
AA seq
DB search
MPLKKYNTKRDFSQTAEPRGIKKTGGRKLHFVVQRHDATRLHYDFRLEMAGVLKSWAVPK
GPSLNPADKRLAVMVEDHPYAYRKFEGTIPKGNYGAGNVEIWDEGTYTALEQQPGKNDEA
VLLQELKNGSLKFVLHGKKLNGEFALVRMKNATEDNAWLLIKHKDAFAVNGAYDAERSPR
KQAARTVKASSNIPAPKKQPAPQGPLVKKKATPLPVSTEKKHRHYIKPMLATIADKPFTD
KDWVFEIKWDGYRAIAETGKKLRLYSRNGLNFANRYGVLAQALAQQQHEMILDGEIVAYN
KEGMPDFQTLQHFEEAPDMPLTYQVFDLLHLNGHSTEALPLLQRKELLKEALNENAVIKY
CDHVVKDGEKFFRAIQKKNLEGMIAKSATSVYAEGIRTTSWLKIKHHHTEEVVIAGYTAP
RGSRKKFGALILGRYDEGKLVYAGHTGTGFDERSLTELYEKMQPLVTERSPFAHTPQTNM
PAVWLRPSLVCNIKFSQLTKDHIFRQPVFQGLREDKAATEIVIPKNEVVMADKKTAQPGS
PAQNEYNIKEGRKTIKLTNQHKIYWPEDGFTKGDLIAYYNVTAPVILPYLKDRPESLNRY
PNGITGESFYQKDAGDAVPEWIKTIQIYSESTKKEIDYIICNDRAALLYLANLGCIELNP
WNSTAKKPDTPTYMIIDIDPSKDNTFDQVIDAALATKQILDDCGAPAFCKTSGATGLHIY
VPLGNKYTYEQVKDFAHLVALHVTELLPDSTTLERNLKKRGTQKIYIDHLQNRRGQTVAS
AYSVRPRPGATVSAPLHWKEVKPGLMPQQFTLQTMQHRLAKTGDLFAPVLGKGIDMLKCL
KKISG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccgctaaaaaaatataataccaaaagggatttttcccaaaccgccgaacccagagga
ataaaaaaaaccgggggcaggaaactgcattttgtagtacagcgtcatgatgccacccgg
ctgcattacgatttccggctggaaatggctggtgtgcttaaaagctgggccgtacccaaa
ggaccttccctgaatccggccgacaaaaggttggcggtaatggttgaagaccacccgtat
gcctaccggaaatttgaaggcactattccaaagggtaattatggcgcaggaaacgttgaa
atatgggacgaaggaacttataccgcgctggagcagcaaccggggaaaaatgatgaggcg
gttttattgcaggagcttaaaaacgggtccctgaaattcgttctgcatgggaaaaaatta
aacggggaatttgcgttggtccgcatgaaaaacgcgacggaagacaacgcctggctattg
ataaagcataaggatgcctttgccgttaacggagcgtacgacgcggagcgttcgcccaga
aaacaggcggccagaacagtaaaagcaagcagcaatattccggccccaaaaaaacaacca
gcaccacaagggccgctcgtaaaaaaaaaagcaacgcccctacccgtctccactgagaaa
aaacaccgccattatataaaacctatgttggcgaccattgcagataaaccctttacagat
aaagattgggtatttgaaattaaatgggatggctaccgggcgatagccgaaacaggtaaa
aaactcaggctttactcgcgcaacggtctcaactttgccaaccggtacggagtactggca
caggccctggcgcaacagcaacatgaaatgatattagatggagaaattgttgcctacaac
aaagaaggaatgcccgattttcaaaccttgcagcattttgaagaagcaccggatatgccg
ctaacctaccaggtatttgatctgctacacctcaacgggcatagtacagaagcgctgccg
ctcctgcaacgcaaggagctgcttaaagaggcccttaacgaaaatgccgtcattaagtat
tgcgatcatgtggtaaaagacggtgaaaaattcttcagggccattcaaaagaaaaacctg
gaaggaatgatcgccaagagcgcaaccagcgtttacgcggagggaataagaactacttcc
tggctaaaaataaaacaccatcataccgaggaagttgttattgcgggttatacggccccc
aggggctcccggaaaaaattcggagccttaattctcggcagatatgacgaggggaaactg
gtgtatgccggtcacaccggaacaggttttgacgagcgatcgctaaccgaattatatgaa
aaaatgcagccgctggtaacggagcggtcgccgtttgcccacactccccaaaccaatatg
cccgctgtatggctgcgccccagcctggtctgcaacattaaattttcccaactgaccaaa
gatcatatcttcaggcaaccggtcttccaggggctcagagaagacaaagcggcaacagaa
attgtcatccctaaaaacgaagtagttatggcggataaaaaaacggcgcagcccgggtca
ccggcacaaaacgaatataacattaaagaaggccggaaaacgataaagctcactaaccag
cataaaatttactggcccgaagatggttttacaaaaggcgatcttatcgcttattacaat
gtaacagcgcccgttatactgccttatcttaaagacaggcccgaaagcctgaaccgttat
cccaacggcatcaccggcgaaagtttttatcagaaagatgcgggggatgctgttccggag
tggatcaaaaccattcagatctactctgaaagcacaaaaaaagagatcgattatattata
tgtaatgaccgggctgcgctcctgtaccttgccaacctcggctgtatagaattaaacccc
tggaacagcacggcaaaaaaaccggatactcccacttatatgatcattgatatcgaccct
tcaaaagataatacctttgaccaggttattgatgccgcacttgccactaaacaaatttta
gatgattgcggagcgccggccttttgcaaaacatccggagccaccggtctgcatatatat
gtaccgctgggcaataagtatacttatgaacaggtgaaagactttgcgcatctggttgct
ttgcatgtaaccgaactactaccggatagtacaacccttgaacggaatcttaagaaaaga
ggtacgcaaaaaatatatatcgaccatcttcaaaaccggagagggcaaaccgttgcaagc
gcttacagcgtgcggccccggccgggagcaacggtatcggcccctttacactggaaggag
gtaaagcccgggcttatgccgcagcaatttaccctacaaaccatgcagcaccggctcgct
aaaacgggcgatctgtttgccccggtactgggcaagggcatcgatatgctcaaatgcctt
aaaaagatcagcggataa
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