Nodularia spumigena: BMF81_02885
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Entry
BMF81_02885 CDS
T05403
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsp
Nodularia spumigena
Pathway
nsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMF81_02885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsp03400
]
BMF81_02885 (mfd)
Enzymes [BR:
nsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMF81_02885 (mfd)
DNA repair and recombination proteins [BR:
nsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BMF81_02885 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
PsbQ
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVZ30843
UniProt:
A0A2S0Q8V0
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All DBs
Position
complement(3294794..3298288)
Genome browser
AA seq
1164 aa
AA seq
DB search
MAFSSIVRALARSPLSTELLSKLNRQQELRLNGISRLPKGLVASALAQNSGNNLLVVVPT
LEEAGRAFAQLEAMGWHTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLMNENGESSQN
PTTKRSLAIVATAGALQPHLPPPDAFIPFCLTVKRGMEFDLDTFGEKITTLGYERVPLVE
TEGQWSRRGDIVDVYPVSSEMPVRLEWFGDEIEKIREFDAATQRSALDKVDQVTLTPTSF
APIVSEALKDNADFTDSELLEGSRRFLGLAFAKPASLLDYLGENTLIAVDEPEQCHAHSD
RWVENAEEQWGVGSREWGVGSGEESSSISLELPKIHRSFDECLVDVTKFPTIYLSELAEE
NSGINLASRSLPVTPHQFNKLAQTLRQERDRNFSIWLISAQPSRSVSLLQEHDCPAQFIP
NPRDYQAIDKLQINHTPVALKYSGLAELEGFILPTYRLVVVTDREFYGQHSLATPGYIRK
RRQASSKQVDPNKLRQGDYVVHRSHGVGKFVKLESLTINHETRDYLVVQYADGILRVAAD
QVGSLSRFRRTGDKAPELHKMTGKAWENTKNRVRKAIKKLAVDLLKLYAARSKQEGYTYP
QDMPWQEEMEDSFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFK
AVTSGKQVALLAPTTILTQQHYHTLKERFAPYPVNIGLLNRFRSAEERRTIQKRLATGEL
DIVVGTHQLLGKNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLY
MSLSGIREMSLITTPPPTRRPIKTHLAPLSPEIVRSAIRQELDRGGQVFYVVPRVEGIEE
LTANLREMIPGGKFAIAHGRLDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTIL
IEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRTLSDAARQRLRAIQEFTQLGSGYQ
LAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKVDETQIDLNLT
AFIPSDYIPDVDQKMSAYRAVAAAKSSEELKYITAEWGDRYGALPVPANQLLRVMQLKQL
AKKLGFSRIKPENKQHIVLETPMEEPAWNLLAANLPEHLKTRFVYSPGKVTVRGLAVLKA
DQQLQSLLDAMNKMQGAVAEAVVV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgctttggcgcgatcgcctctgagtactgaattactt
tctaagctaaatcgccaacaagaattgcggttaaatggtatctctcgcctacctaaaggt
cttgtggcttcggcgttagcgcaaaattctggcaataatttgttggtagtagttcctact
ctggaggaagccggacgggcttttgcacagttggaagcgatgggatggcacacagtgcat
ttttacccgacttccgaagcctctccctacgaaccctttgacccggaaacggaaatgact
tggggacagatgcaggttctggctgatttgatgaatgaaaacggggaatcaagccaaaat
cccacaaccaagcgttctttggcaattgtcgccacggctggggcgttacaaccccattta
ccaccgccagatgcttttataccgttctgtctgactgtcaagcgggggatggaatttgat
ttggataccttcggcgaaaaaatcacgactttgggctatgaacgcgttccactggtggaa
acagaaggccaatggagtcggcgcggtgatattgtcgatgtttatccggtttcgtcggaa
atgcccgtaagattagagtggtttggcgatgaaattgagaaaatccgcgaatttgatgct
gcaactcaacgttctgctcttgacaaagttgaccaagttaccctgactcctactagtttt
gcgcctattgtttcggaagcactcaaagacaatgctgattttacagattcagaactttta
gaaggtagccggcgttttttgggattggcttttgcaaaaccggcttcgcttttagattac
ttaggtgaaaatactctgattgctgtggatgaaccagaacagtgtcatgcacatagcgat
cgctgggtggaaaatgcagaagaacaatggggagtggggagtagggagtggggagtaggg
agtggggaagaatctagctctatttccttagaattaccgaaaattcaccggtcttttgat
gaatgtctcgttgatgtgactaaatttcccaccatatatttatcagaactagctgaggaa
aacagtgggataaatttggcgagtcgttcgttacctgtgacaccgcaccaatttaataaa
ctcgcgcaaacacttagacaagagcgcgatcgcaatttctccatttggctcatttctgcc
caaccttcccgttctgtctctctcctccaagaacacgattgtccggcgcaatttatcccc
aatccccgtgactaccaagcaattgacaaattacaaattaaccatacacctgtagccctg
aaatattccggtttagccgaactagaaggctttattttgccgacatatcggctggtagtc
gtcacagaccgggaattttacggacagcattccttagctacaccgggatatatacgtaaa
cgtcgccaagccagttccaaacaagtagaccctaacaagttgcgtcaaggtgattatgtc
gttcacagaagtcacggagtaggtaaatttgtcaagctggaaagtctcacgattaaccac
gaaacccgtgattatttagtagtacagtatgctgatggtattctgagagttgcagctgat
caagttggttctttatcccggtttcgccgcacaggagataaagccccagaactgcataaa
atgactggtaaggcttgggagaatacgaagaaccgagttcgtaaagccatcaaaaagtta
gcagtggatttactgaaactttacgcagcgagatccaagcaagaaggctatacctatccc
caagatatgccttggcaagaagaaatggaagattcttttccctaccaagccactacagac
cagctaaaagctgtgcaggatgtcaaacgcgatatggaaagcgatcgcccaatggatcgt
ttagtttgtggtgatgtaggatttggtaaaaccgaagtagctattcgcgcgattttcaaa
gctgtgacatcaggtaaacaagtcgcactgttagcacccaccaccattctgactcagcaa
cattaccacacccttaaagaacgctttgcaccttacccggtaaatatcggcttactgaat
cgttttcgcagtgctgaagaacgccgcacgattcaaaagcgattagctacaggggaatta
gatatagtcgtggggacacatcaacttttagggaaaaatgtcagctttcgggatttaggg
ctgttggtggtggatgaagaacaacgatttggggtgaatcaaaaggaaaaaattaaaagc
ttgaaaactcaagttgatgtgctgacactttccgcgactcccattccccgtaccttatat
atgtctttgtcgggaattcgggaaatgagtttaattaccacaccaccccccaccagaaga
ccaattaaaactcaccttgcgccattaagcccggaaattgtccgcagtgctattcgtcaa
gaattagacagagggggacaagttttttatgtagttccacgagtggaaggcattgaagaa
ctgacagctaatttacgagaaatgataccggggggtaagtttgcgatcgctcacggtcgt
ctggatgaaagcgagttagaatcaaccatgctgactttcagtaatggtgatgccgatatt
ctggtttgtacaacaatcattgaatctggcttagatattccgcgagtcaacaccatctta
attgaagatgctcaccgcttcggtttatcgcaattataccaattacgtggtcgtgtagga
cgtgctggaatccaagcacacgcttggttattttatcccaagcaacgaactttatcagat
gccgcacggcaacgactgcgggcgattcaggaatttacccaactcggttctggatatcag
ctagcgatgcgcgacatggaaatccggggtgtgggtaacttgctaggtgcagaacaatct
ggtcaaatggaagcgatcggctttgatttgtatatggaaatgctggaagaggcgattcga
gaaattagaggacaagaaatacccaaagttgatgagacacaaattgacctcaacctcaca
gcatttattccttccgattatattcccgacgtggatcaaaagatgagtgcttaccgggca
gtggcggcggcgaagtcttcagaagaattaaagtatatcacggctgagtggggcgatcgc
tatggtgcgttaccagttccagcgaatcaacttttacgagtcatgcaactcaaacagcta
gcgaaaaagttaggatttagccgcattaaaccagagaataagcagcacattgttttagaa
acgccaatggaagaacctgcttggaatttactagcggcgaatttaccggaacatttaaag
acgcgttttgtttactctcctggtaaggtgacagtgcgcggtttagcagttttaaaagct
gaccaacaattacaaagtttgttagatgcaatgaataaaatgcaaggtgctgttgcagag
gcggttgttgtgtga
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