Nodularia sphaerocarpa: BDGGKGIB_01301
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Entry
BDGGKGIB_01301 CDS
T08134
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BDGGKGIB_01301 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_01301 (mfd)
Enzymes [BR:
nsph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BDGGKGIB_01301 (mfd)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BDGGKGIB_01301 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
PsbQ
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ULP71669
LinkDB
All DBs
Position
1589667..1593140
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AA seq
1157 aa
AA seq
DB search
MAFSSIVRALARSPLSTELLSKLNRQQELRLNGISRLPKGLVASALAQNSGRNLLVIVPT
LEEAGRAFAQLEAMGWHTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVNGDWESSQN
PTAKRSLAIVATAGALQPHLPPPNAFIPFCLTLKRGMEFDLDTFGEKITTLGYERVPLVE
TEGQWSRRGDIVDVYPVSSEMPVRLEWFGDEIEKIREFDATTQRSALDKIDQITLTPTSF
AFMVSEALKDNPDFTESALLEGSRRFLGLAFAQPASLLDYLGENTLIAVDEPEQCHAHSD
RWVENAEEQWGIATGEESSSISSELPKIHRSFDECLADVTKFPTIYLSELSEENSGINLA
SRSLPVTPHQFNKLAQTLRGERDRNFSIWLISAQPSRSVSLLQEHDCPAQFIPNPRDYQA
IDKLHINHTPVALKYSGLAELEGFILPTYRLVVVTDREFYGQHSLATPGYIRKRRQASSK
QVDPNKLRQGDYVVHRSHGIGKFVKLESLTINHETRDYLVVQYADGILRVAADQVGSLSR
FRRTGDKAPELHKMTGKAWDNTKNRVRKAIKKLAVDLLKLYAARSKQEGYPYPQDMPWQE
EMEDSFPYQATTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTSGKQ
VALLAPTTILTQQHYHTLKERFAPYPVNIGLLNRFRSAEERRTIQKRLATGELDIVVGTH
QLLGKNVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIR
EMSLITTPPPSRRPIKTHLSPLTPEIVRSAIRQELDRGGQVFYVVPRVEGIEELTANLRE
MIPGGRFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRF
GLSQLYQLRGRVGRAGIQAHAWLFYPQQRTLSDAARQRLRAIQEFTQLGSGYQLAMRDME
IRGVGNLLGAEQSGQMEAIGFDLYMEMLEEAIREIRGQEIPKVDDTQIDLNLTAFIPSDY
IPDVDQKMSAYRAVAAAKSPEELKYITAEWSDRYGALPVPANQLLRVMQLKQLAKKLGFS
RIKPENKQHIVLETPMEEPAWNLLAANLPEHLKTRFVYSPGKVTVRGLAVLKADQQLQSL
LDAMNKMQGAVAEAVVV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgctttagcgcgatcgcctctcagtactgaattactt
tccaagctaaatcgccaacaagaattgcggttaaatggcatttctcgcttaccaaaaggt
ctggtggcttcggcgttagcgcaaaattcaggtaggaatttgttggtaatagttccaacc
ctggaggaagccggacgcgcttttgcacagttggaggcgatgggatggcacacagtgcat
ttttacccgacttctgaagcctctccttacgaaccttttgacccggaaacggaaatgact
tggggacagatgcaggttctcgctgatttggtgaatggcgactgggaatcaagccaaaat
cccacagcgaagcgttctttggcaattgtcgccacggctggcgctttacaaccccattta
ccaccgcccaatgcttttatccctttctgtctcaccctcaagcgggggatggaatttgat
ttggataccttcggcgaaaaaattacgactttggggtatgaacgagtaccactggttgag
acagaagggcaatggagtcggcgcggtgatattgttgatgtctatccggtttcgtcggaa
atgccagttagattagagtggtttggggatgaaatcgaaaaaatccgcgaatttgatgcc
acaactcaacgttctgcccttgacaaaattgaccaaattacccttacccccactagtttt
gctttcatggtctcggaagcactcaaagacaatcctgattttacagagtcggcactttta
gaaggtagtcggcgttttttgggtttggcttttgcacaaccggcttcacttttagattac
ttaggtgaaaatactctgattgctgtggatgaaccagaacagtgtcatgcacatagcgat
cgctgggtagaaaatgcggaggaacaatggggaatagctactggggaagaatctagctca
atttcctcagaattgccaaaaattcaccggtcttttgatgaatgtctggctgatgtgact
aaatttcccactatatatttatcagaactatcagaagaaaacagtgggataaatttggcg
agtcggtcgttacctgtgacaccgcaccaatttaataaactggcgcaaacacttagagga
gaacgcgatcgcaatttctcgatttggctaatttctgcccaaccttcccgttctgtatcc
ctactacaagaacatgattgtccggcgcaatttatccccaatccccgtgactaccaagca
attgacaaattacacattaaccatacacctgtagccctgaaatattccggtttagcggaa
ctcgaaggctttattttgccgacatatcggctggtagtcgtcacagaccgcgaattttac
ggacagcattccctcgccacaccgggatatattcgcaagcgtcgccaggccagttccaaa
caagtagaccctaacaaactgcgtcagggtgattatgtagttcacagaagtcacggaatt
ggtaaatttgtcaagctggaaagcttaacgattaatcatgaaacccgtgattatttggta
gtgcagtatgctgacggtattctcagagtagcagccgatcaagttggttctttatcccgc
tttcgccgcaccggagataaagccccagaactgcacaaaatgactggtaaggcttgggat
aatacgaaaaaccgagttcgtaaagccatcaaaaaattagcggtggatttgctgaaacta
tatgcagcccgatccaagcaagaaggctatccctatcctcaagatatgccttggcaagaa
gaaatggaagattcttttccctatcaagccactaccgaccagctaaaagctgtgcaggat
gtcaagcgagatatggaaagcgatcgcccaatggatcgtttagtctgtggtgatgtagga
tttggtaaaaccgaagtagcaattcgggcgatttttaaagctgtgacatcaggtaaacaa
gtcgctttgttagcacccactactattctgactcagcaacattaccacaccctcaaagaa
cgctttgcaccttacccggtaaatatcggcttattgaatcgttttcgcagtgctgaagaa
cgccgcacgattcaaaagcgattagccacaggggaattagatatcgtcgtcgggacacac
caacttttaggtaaaaatgtgtcgtttcgggatttaggattgttggtggtggatgaagaa
caacggtttggggtgaaccaaaaggaaaaaattaaaagcttgaaaactcaagttgatgtg
ctaacgctttccgcgactcccattccccggactttatatatgtctttgtcggggattcga
gaaatgagtttgattaccacaccaccccccagtagaagaccaattaaaactcacctttcg
ccattaaccccggaaattgtccgcagtgctattcgtcaagaattagacagagggggacaa
gtattttatgtagttccacgagtggaaggcattgaagaactcacagctaatttacgagaa
atgataccggggggtaggtttgcgatcgctcatggtcaaatggatgaaagcgagttagaa
tcaaccatgctgacgttcagtaatggtgatgcggatattctggtttgtacaacaatcatt
gaatctggtttagatattccgcgagtcaacaccattttaattgaagatgcccaccgcttc
ggtttatctcaattataccaattacgtggtcgtgtgggacgtgccggaatacaggcacac
gcttggttattttatccccagcaaagaactttatcagatgcagcacggcaaaggttgcgg
gcgattcaggaatttacccaactcggttctggatatcagctagcgatgcgcgacatggaa
atccggggtgtgggtaacttgctgggtgcagaacaatcgggtcaaatggaagctatcggc
tttgatttgtatatggaaatgttagaagaggcgattcgagaaattagaggacaagaaata
cccaaagttgatgatacacaaattgacctcaacctcacagcatttattccttccgattat
attcccgacgtagatcaaaagatgagtgcataccgtgcagtggcggcggcgaagtctcca
gaagaattaaaatatatcacggctgagtggagcgatcgctatggtgcgttaccagttcca
gcgaatcaacttttacgagtaatgcaactcaaacagttagcgaaaaagttaggatttagc
cgcattaaaccagagaataagcaacatattgttttagaaacgccaatggaagaacccgct
tggaatttactagcagcgaatttaccagaacatttgaagacgcgttttgtttactctcct
ggtaaagtaacagtgcgcggtttagcagttttgaaagctgatcaacaattgcaaagtttg
ctggatgcaatgaataaaatgcaaggtgctgttgcagaggcggttgttgtgtga
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