Notechis scutatus (mainland tiger snake): 113423021
Help
Entry
113423021 CDS
T09026
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03030
DNA replication
nss03410
Base excision repair
nss03420
Nucleotide excision repair
nss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113423021 (LIG1)
03410 Base excision repair
113423021 (LIG1)
03420 Nucleotide excision repair
113423021 (LIG1)
03430 Mismatch repair
113423021 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nss03032
]
113423021 (LIG1)
03400 DNA repair and recombination proteins [BR:
nss03400
]
113423021 (LIG1)
Enzymes [BR:
nss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113423021 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
113423021 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
113423021 (LIG1)
DNA replication proteins [BR:
nss03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
113423021 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
113423021 (LIG1)
DNA repair and recombination proteins [BR:
nss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
113423021 (LIG1)
NER (nucleotide excision repair)
Other NER factors
113423021 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
113423021 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
113423021
NCBI-ProteinID:
XP_026540022
UniProt:
A0A6J1V9R1
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MVSFSLIKIIMHSVALRMGKNMYNHVYLCLNRSFFQPLARVKSEKEKTEDNHLEDVLISQ
KKLVNGSELCEDFAVNSASKKAKVLKSDDEEDSVELDRKGAQADDNKLSPGCVPEQKISE
ESISPSTSPTTSNSTTSVSIPRRKTARKQLSKRKPEEDDNSDYSHENRSSKRWKEDLDGD
DSEDKTNEKPVKVEEVKSENATLVEHKTDKNTKEKIPDSSKPSSKSISSFFAPKKSSVKI
EKKQASIVSENMPIPKCLNKVSNDESKNMADNFLKPSLTLEPAEYNPTKSSYHPVHDACW
GPGQKCVPLRIPYMAVARTFEYIEEESARLKIIETLSNLFRSLIVLSPQDLLPCVYLCLN
RLGPAYEGLELGIGKTILMKALAQATGRQLDQIKAEAAEKGDLGVVAENSRTTQGTVFAP
PKLGAAAVFGKLQAIGHMAGSSSMNKKIDIIKSLFVACRHSEARYVARSLEGKLRIGLAE
QSVLSALAQAGSLTPPGQKFPPDVLDAAKGKSADARKAWLDERALIVKQAFCELPNYNII
VPVLLEHGVESLPQYCKITPGIPLKPMLAYPTKGIGEVLKRFEEAAFTCEYKYDGERAQI
HILENGEVHIYSRNQENNTTKYPDIVTRVPKVKNSTVESCILDAEAVAWDPVSKQILPFQ
VLTTRKRKDVDAAEIRVQVCIYAFDMLYLNGISLVQKPLSQRRTLLHNSFTEVEGQFLFA
TSMDTSNVDEIAEFLERSIKDSCEGLMVKSLEVDATYEIAKRSHNWLKLKKDYLEGVGDT
LDLAVIGAYLGKGKRAGTYGCFLLACYDEESEEFQSICKIGTGFSDEDLEKLHNSLKDYV
IPQPRPYYRWGGTAEPDHWLEAQHVWEVKCADLSISPIHRAASGLVDEEKGISLRFPRFM
RIRDDKKPEEATSSAQVAELYQQQQQIQNQLALEKDDFY
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggtatcattctctcttataaaaattattatgcactctgtagccctgagaatggggaag
aatatgtataaccatgtttatttatgtctgaacagatcattcttccagcctctggcacga
gtaaagtctgaaaaagaaaaaacagaagacaaccacttggaagatgtgcttatttcacaa
aagaaattagtaaatggttcagaactctgtgaagacttcgcagtgaactctgcatcaaaa
aaagctaaggtccttaagagtgatgatgaagaagattctgtggaattagatagaaagggt
gcacaagcagatgacaacaagttgagccctggctgtgttcctgagcaaaagatctctgaa
gagagcatctctccaagtactagcccaactacctccaattcaaccacatctgtcagtatc
ccaaggcgcaaaactgcccgcaagcagctctctaaacgtaaaccagaagaagatgacaac
agcgattattcccatgaaaatcgcagtagtaaaagatggaaggaagaccttgatggtgat
gattctgaagataaaacgaatgagaaacccgtgaaagtggaagaagttaaaagtgagaat
gcaacattggtggagcataaaacagacaaaaatacaaaggaaaaaatcccagattcctct
aagccatccagcaagtccatttctagtttctttgctcccaagaaaagttctgtgaaaata
gaaaagaagcaagcatctatagtatcagaaaatatgccaataccaaagtgtcttaataaa
gttagtaatgatgaatctaaaaatatggctgacaattttctcaagccatctcttacactt
gagcctgcagagtacaaccctacaaagagcagttatcatcctgttcatgatgcttgctgg
ggccctggccaaaagtgtgtgccactgaggataccatacatggctgttgctcgtactttt
gaatatattgaggaagaatctgcccgattgaaaattatagagaccctaagcaatctcttt
cgttctctgattgtcctatctccacaagacttgctcccctgtgtctacctctgtctcaat
cggttaggtccagcatatgaaggcctagaattaggcattggcaaaaccatcctcatgaaa
gctttggcccaggccacaggtcggcaattggaccaaatcaaggcagaggcagcagagaag
ggagatctaggtgtagttgctgaaaacagtcgcacaacacaaggaactgtgtttgctcca
cccaaacttggtgctgctgctgtctttggcaaactgcaagcaattggtcacatggcagga
agttcttctatgaacaagaaaattgacattattaaatctttgtttgttgcgtgtcgtcat
tcagaggctcgttatgtggctcggtcactagaaggaaagttacggattgggttagcagag
cagtctgtcctctcagctcttgcccaggcaggatcactcactcccccaggacaaaaattt
cccccagatgttttggatgctgcaaagggcaaatctgcagatgcacgcaaagcatggctg
gatgaaagggccttgattgttaagcaggccttctgtgaactaccaaattataacataata
gtacctgtccttttggaacatggtgtggagagcttgccgcagtactgcaagatcacacca
ggtattcccctgaagcccatgctggcttatccaaccaaaggaattggggaggtattaaaa
cgctttgaagaagcagccttcacttgtgaatacaaatatgatggggagcgggcacagatc
cacattctagagaatggagaagtacatatttatagccgaaaccaagagaacaacacaaca
aagtacccggatattgtcactcgtgttcccaaggtgaaaaacagcactgtggaatcatgc
attttggatgcagaggcagtggcctgggaccctgtttcaaaacagatccttccattccaa
gtattgaccacccgcaagcgcaaggatgtggatgctgcagaaatcagagttcaagtttgt
atatatgcatttgatatgctctaccttaatggaatatctttagtccagaagcctctgtct
cagcgccggaccttactgcataattctttcactgaagttgaaggccaattcctttttgcc
acttccatggatactagtaatgttgatgagatagcagaattcctggaacgctctatcaaa
gactcatgtgaaggcttaatggtaaaatcactggaagtggatgccacatatgaaattgca
aagaggtcacacaattggttgaagcttaaaaaagattatctggaaggtgttggggacacc
cttgacctggcagtgattggagcctatttgggcaagggcaaacgggcaggcacatatgga
tgttttcttctagcatgttacgatgaggaaagtgaagagttccagagcatttgcaagatt
ggcactggattctcagatgaggacttagagaaactccataactcactcaaggattacgtg
attccacagccacgaccatactatcgttggggtggaacagctgaacctgatcactggttg
gaagcccagcatgtttgggaagtgaagtgtgccgatttatccatttctcccatccataga
gcagcatcaggtttggtggatgaagaaaagggcatctccttacgttttcccagattcatg
cgcatccgagatgataagaaaccagaggaggccactagcagtgctcaggtagctgaactt
tatcagcagcagcagcagatccaaaatcaactggcactggaaaaagatgacttctattaa
DBGET
integrated database retrieval system
