Notechis scutatus (mainland tiger snake): 113425468
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Entry
113425468 CDS
T09026
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nss
Notechis scutatus (mainland tiger snake)
Pathway
nss03013
Nucleocytoplasmic transport
nss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113425468 (UPF1)
03015 mRNA surveillance pathway
113425468 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nss03019
]
113425468 (UPF1)
Enzymes [BR:
nss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113425468 (UPF1)
5.6.2.5 RNA 5'-3' helicase
113425468 (UPF1)
Messenger RNA biogenesis [BR:
nss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113425468 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113425468 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113425468
NCBI-ProteinID:
XP_026543410
Ensembl:
ENSNSUG00000005744
UniProt:
A0A6J1VKD1
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGGVA
PGTPGLQGVGVGVGAGGPPSVVVPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVT
HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQ
GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA
VDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGE
LSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPEC
MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHP
ALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLN
RTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV
DAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWN
HLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSV
YDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANGPAA
GGMFAGRGNLKGKTGRGGRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISM
SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgagctgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccgggggaggctccgggagcggaggaggcggcgtcgcg
ccggggaccccgggactccagggggttggcgtcggagtgggcgcgggggggccgccttcc
gtcgtcgttccggggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggggctgtggatgataatgtgcctaaaaccagccaacttcttgcagagctcaattttgaa
gaagatgaggaagacacttactacaccaaggaccttcctatacatgcctgcagctattgt
ggcatccatgacccagcttgtgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccatcttgtgagagccaagtgcaaa
gaagtgactcttcataaagatggtcctctgggcgagaccgtcttggaatgctataattgt
ggctgtcgtaatgtgtttcttcttggtttcatcccagccaaagctgactccgtggtggtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattcct
tcagaacaagaacaactgagggcccggcagatcacagctcagcaaattaacaaactagaa
gaactctggaaggagaacccatctgccactttggaggacctggaaaagcctggggttgat
gaagagccacagcatgtcctccttagatatgaagacgcttatcagtaccagaacatcttt
ggtcctctggtcaagcttgaggcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ctgccgaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctcagatac
aaaggggatttggcaccactgtggaaaggaattggccatgtcattaaagttcctgacaat
tacggtgatgaaattgcaattgagttgagaagtagtgttggtgctcctgtggaagtgact
cacaatttccaagtagattttgtatggaaatcaacatcctttgatagaatgcagagtgcc
ctaaaaacatttgctgtggatgaaacatcagtttctggttacatctatcacaaacttctg
ggtcatgaggtggaagatgttataattaaatgtcagttgccaaagcgcttcacagcacaa
ggacttccggacctcaaccattctcaggtgtatgcagtgaagactgttttgcagcgtccc
ttgagtcttatccaggggccccctggcacaggcaagactgtgacatcagccacaattgtg
tatcacctggcaaggcaaggaaatgggcctgtgctggtttgtgccccaagtaacattgct
gtggaccagctgacagaaaaaatacatcagacggggctgaaggtggtgcgcctgtgtgca
aagagccgcgaggccattgattcacctgtctctttcttagcactgcataaccagatcagg
aatatggatagcatgccagagctccagaaactgcagcaactgaaagatgagactggggaa
ctgtcatccgctgatgagaaacgctaccgagcacttaaacgaacagctgagcgggaattg
ctaatgaatgcagatgtcatttgctgcacatgtgtcggagccggcgacccaaggcttgct
aaaatgcagtttcgttccattttgattgatgaaagcacacaggccactgagccagagtgc
atggtgcctgttgttcttggggcaaaacagttgatccttgtgggcgatcattgccagctc
ggccctgtcgtaatgtgcaagaaggcagctaaagcaggtctgtcgcaatccctctttgag
cgactggtggtgctgggcattcggcccattcgcctgcaagttcagtaccgtatgcaccca
gccctgagtgcttttccttccaacatcttttatgaaggatcactccagaatggtgtcact
gcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagacaagcccatg
tttttctacgtgacccaggggcaagaagaaattgcaagttctggcacttcttatttgaac
agaacagaggcagccaatgtggagaaaataaccacaaagctactgaaggctggtgcaaag
ccagatcagattggtatcatcacaccctatgagggccagcgttcatacttggtgcaatac
atgcagtttagtggatctttgcataccaaactttatcaggaagtcgaaatcgctagtgtt
gatgctttccaagggcgagagaaggacttcattatcctctcctgtgttagagccaacgaa
catcaaggcattggcttcctgaatgacccccggcgtctcaatgtggctctcacaagagca
agatatggggtcattattgttgggaatccaaaggcactctccaagcagcctctctggaat
caccttctgaactactacaaggagcaaaaggtcctggtggagggaccattgaacaatctc
cgcgagagcctcatgcagttcagcaagcctcgaaaactggtcaacactatcaacccagga
gcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccctggatccgtt
tatgatcgcagcagccaaggccggccatccaacatgtatttccaaacccatgatcagatt
gggatgatcagtgctgggcccagtcatgtcaccaccatgaacattcctatcccattcaac
ttggtgatgcctcctatgcctccaccagggtactttggacaggccaacggaccagctgca
ggtgggatgtttgcaggacgtggaaacctgaaaggcaaaacggggcgtggtgggcgacag
aagaatcgttttgggattccaggagccagccagtcgaacctccccaacagccaggccagc
caagacgtggtctcccagcctttctctcagggccccttgactcagggttacatctccatg
agccaaccctcacagatgagccagcctggcctctcccagccagaattgtcacaggatagt
taccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggattcaacttac
cagggggaacgcgcatatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
