Neomonachus schauinslandi (Hawaiian monk seal): 110581719
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Entry
110581719 CDS
T08474
Symbol
COL15A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110581719 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nsu00535
]
110581719 (COL15A1)
Proteoglycans [BR:
nsu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110581719 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110581719
NCBI-ProteinID:
XP_021547300
EnsemblRapid:
ENSNSCG00000005187
UniProt:
A0A2Y9HC33
LinkDB
All DBs
Position
13:61662574..61728763
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AA seq
1348 aa
AA seq
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MASVSLPADLASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPP
TFFRDFAISVTVKPSSDRGGVLFAVTDAFQKIIYLGLRLSGVEGGRQRVILYYTEPGSHV
SHEAAAFPVPVMTHRWIRFAVVVQGEEVILLVDCEEHSHVPFQRSSWPLAFEPSAGIFVG
NAGATGLDRFTGSIQQLTIHPDPRIPEEMCEAEGSSASGEASGLLEAEGVAEILEAVSYT
QAPSKEAKVEPINTPPTPSSPSEDAELSGEPVPEGTPEITNLSVVMHRSPEQGSGEVLND
TLEGVHTMDGTPVTDVGSGDRAFIHVTEEGVHAEEGLAATAAVGEAEVPTSTAGEAETSG
VPTGGPALSLSTEVMGEGVTLGADAEEGSAAAAAGEAEVPGSSAGEVKAGSVPTGGATLS
TAIQDAGEGVTWGAVGEGMFTTPAAAAEVPLSTSEEEETRGVPTGGLVPPTRTVAPEQVV
ASGSGDEEDLAAAAREEPLPGTVAEELDSSPPEGPPLPIPTVASERGVTLAEAGEGLPGH
PEPARPTGPTVGAEAEGSGLGWGLDVGSGSGDLVRGGELLRGPPGPPGPPGSPGIPGKPG
TDVFMGPPGSPGQDGAAGEPGPPGPEGQPGADGASGLPGMKGEKGARGPNGSVGEKGDPG
NRGLPGPPGKNGQVGSPGVMGPPGPPGPPGPPGPGCATGLGFEDTEGSGGIRLLHEPRIS
GPVAPSGPKGEKGDQGPKGDRGMDGASIMGPPGPRGPPGRIELLSSSLSNVTHGFVNLSD
IPELTGPPGPEGIPGLPGFPGPRGPKGDIGVPGFPGLKGEQGEKGEPGAILTGDIPLERL
QGKKGEPGVHGGPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDQGIMMPGPPGLP
GPPGPPGPPGAVINIKGAVFPVPVRPHCKTPVDATHPGNSELITFHGVKGEKGSWGLPGS
KGEKGDQGAQGPPGPPVDPAYLRHVLNSLKGENGDRGIKGEKGDSHGDFSVSGPPGPPGS
PGLVGQKGETVVGPQGPPGAPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPP
GPPGQPGLPGSRNLVTAFSTMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGE
LIPIPADSLPPPALSSNPHQPPRPLMPLSSVSYERPALHLVALNTPFSGDLRADLRCFQQ
AGAAGLLSTYRAFLSSHLQDLSTVVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNT
HVPIYSFDGRDVMTDPSWPQKVIWHGSSPHGVRLVDNYCEAWRTADMAVTGLASPLSTGK
ILDQKTYSCANRLIVLCIENSFMTDARK
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgtctccctccctgcagatttggcttcccagggccacctggacctcacggag
ctcatcggtgtcccgctgccctcatctgtgtcctttgtcacgggctatggtggcttccca
gcctacagcttcgggcctggtgccaacgtcggccgcccggccaggaccctcatcccaccc
accttcttcagggactttgccatcagcgtcacggtgaagcccagcagtgacagaggcggc
gtgctctttgccgtcaccgatgccttccagaagatcatctacctgggcctgcggctctcg
ggcgtggagggtggccgccagcgggtcatcctctactacacggagccaggctcccacgtg
tctcacgaggctgctgccttcccggtgcccgtgatgacccacaggtggatccgctttgca
gtggtcgtccagggcgaggaggtgatcctcctcgtggactgcgaggagcacagccacgtc
cccttccagcggtcctcctggcccttggctttcgagcccagtgcaggaatctttgtgggc
aatgcaggagcaacggggctggatagattcaccggctccatacagcagctcaccatccac
cctgaccccaggatccccgaagagatgtgtgaagccgaaggatcctcggcttcaggagaa
gccagcgggcttctggaggcagagggcgtcgctgagatcttggaagctgtcagctacact
caagcgccgtctaaagaagcaaaagttgaacccataaacacacctccaactccatcgtct
ccttctgaggatgcggagctttctggcgagcctgtacccgaggggactccagaaatcacc
aacctgagtgtcgtcatgcacagaagccctgagcaagggtctggtgaggtcctgaatgac
acactggagggagttcatactatggacggtacccccgttacagatgttggctccggggat
agggccttcattcatgtcactgaagagggtgtgcatgccgaagaaggtttggcagccaca
gcagcagtcggggaggctgaggtgcccaccagcaccgctggggaagcagagaccagtggt
gtgcccaccggggggccagccctctccttgtccactgaggtcatgggggaaggggtcact
ctgggtgcagatgctgaagaaggctcggcagccgctgcagctggggaggccgaggtgccc
gggagctccgccggggaagtgaaggctggcagtgtacccacggggggagccaccctctcc
acggccatccaggacgccggggaaggggtgacatggggtgcagtcggtgaaggaatgttc
acaacaccagcagctgcagcagaagtgcccctcagcacttctgaggaagaggagactcgc
ggggtccccacaggtggcctggttccccctacacgcacagtggcccctgagcaagtggtc
gcttctggctctggtgatgaggaggacctagcagcagccgcaagagaggagcccctgcca
ggcactgtggccgaagagctggacagcagtccccctgaggggcccccactgcccataccc
acagtggcttctgaaagaggggttactctggctgaagctggtgaggggcttcctggccac
cctgaacctgccaggcctaccggacccacggtgggagctgaggccgagggctccggcctg
ggctggggcttggacgtcggctctggctctggtgacctggtgcgcggtggggagctgtta
agaggtcccccaggccccccgggcccacctggctcacctgggattccaggaaaaccagga
actgatgttttcatgggaccccctggatcgcctgggcaagatggagctgctggtgaacct
gggcccccgggccctgagggacagcctggagctgatggagcctccggccttcctgggatg
aagggagagaagggcgcaagagggcctaatggctcagtcggtgaaaagggcgaccctggc
aacagaggcttaccaggacctccagggaaaaatggacaagttggctctcctggggtcatg
ggacccccggggcctcctggacccccagggcccccaggtcctggatgtgcaacgggactt
gggtttgaggataccgaagggtctggaggcatcaggctgttacacgaacccagaatctcc
ggaccagtggctccgagtggtcccaaaggagaaaaaggagaccagggacccaagggtgac
agaggcatggatggagccagcattatgggaccccctggacccagggggccgcctggtcgc
atcgagctcctgtccagttccttgagcaacgtcacccatgggttcgtgaatctctcggac
atccctgagctcactgggcctccgggtccggagggcatacctgggctgccaggatttcca
ggccctcgaggaccaaaaggtgacatcggggtgcctgggtttccaggactgaaaggagaa
cagggcgagaagggagagccaggtgccatcctgacaggggacattcctctggaacggctg
caggggaaaaagggtgaacctggagtgcacggaggcccgggcccaatggggcccaaagga
ccgccgggacacaaaggagagtttggccttcccggacgacctggtcgcccaggactgaat
ggcctcaagggcgccaaaggagaccaagggatcatgatgccgggcccacctggcttacct
ggtcctccagggcccccgggaccccctggagctgtgattaacatcaaaggagctgtcttc
cccgtaccagtccgaccacactgcaaaacgccggttgacgccactcatcctgggaattca
gaactcatcaccttccatggtgttaaaggagaaaaaggatcctggggtcttcccggctca
aaaggagaaaaaggcgaccagggggcccaaggaccaccaggccctccggtggatccagct
tacctgagacatgttctgaacagcttgaagggggagaatggagaccgggggatcaaaggg
gaaaaaggagattctcacggtgacttctctgtgtcggggcctccaggcccaccaggaagt
cctggcttggttggccagaaaggggagactgtcgtcgggccccagggacccccgggggct
cccggcctgcctgggcctcctggctttggaagacctggatcccctgggccaccaggaccc
ccagggccaccaggaccaccagcgatccttggagcagctgtggcccttccaggcccaccc
ggccctccaggacagccagggcttcccggatccagaaatctggttacggcatttagcacc
atggatgacatgctgcagaaagcacatttggtcattgaagggacgttcatctacctgagg
gacagcactgagttcttcattcgggtccgagatggttggaagaaattacagctaggagaa
ctgatccccattcctgccgacagcctgccgccccctgcgctctccagcaatccacatcag
cctccacgtccactgatgccgctttcaagtgtcagctacgagaggcctgcactgcacttg
gttgctctgaacacaccgttctccggggaccttcgagctgatttgcggtgcttccagcag
gccggggctgcggggctgttgtctacctaccgggccttcttatcctcccatctgcaagac
ctctccacggttgtgaggaaagcagagagatacagccttccaatagtgaacctcaagggc
caagtacttttcaacaactgggactcaattttttctggccacggaggtcagttcaataca
catgttccaatatactcctttgatggccgagacgtgatgacggatccttcctggccccag
aaggtcatttggcacggctccagcccccatggagtgcgtcttgtggataactactgtgaa
gcgtggcgaacggctgacatggcagtcacgggactggcctccccactgagcacagggaag
attctcgaccagaaaacatatagctgtgctaataggctcattgttctgtgtatcgaaaat
agtttcatgacagatgccaggaagtaa
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