Nicotiana sylvestris (wood tobacco): 104217038
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Entry
104217038 CDS
T05026
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104217038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104217038
Enzymes [BR:
nsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104217038
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104217038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
104217038
NCBI-ProteinID:
XP_009765492
UniProt:
A0A1U7VBU0
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MATSAVDGGGSSIGGEDIKFSVMVSLFQWIQKSKSSAQKRSKFRKFLDAFCRKPQDNFAA
MRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNFS
LVAAEVLQRRQGMASAGLTIKELNEFLDHLASSENRAEKTSILSDLIRKTNAQEMKWIIM
IILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKHQDIEVGKAVRP
QLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSDLNFFSRNFFDHQEYAHGMSD
VITQNILVNKCILDGEMLVWDASMNRFAEFGSNQEIAKAAREGLDSDRQLCYIAFDILYV
GDTSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNAHRPSGEPCWSIIAHSVDDVDK
FFKETVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHG
GEVAQFLVGLAERPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAPP
TFYQVTNNAKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDRVRYEKPW
HECLDVQSFVDLVHSSNGTTQREADYGVGQDHEPKAIRSSRKRGKKNVSAVPSHFVQTDV
SHIKGETSVFSNMVFYFANVPSSHTLDSMHKMVVEHGGSFSMNLNNSVTHCIAAENRGIK
FQAAKLHGDVIHCSWLFDCCLQKRLLPLQPKYFLFLSDSTKRKLEAEVDEYCDSFYSDLS
VKDIRKLLSDIERSEDSKTVEYYKKKYCPKDKWARFHGCCICFFIPEQCLKYSDCKALVE
LATRRMKVEISVGGGKVGDNLCHVTHVVVMSLPDFDVNFSEVLNSFSEAEKHVLYNTKLH
VVRASWLEDFFKEDRKLHEDSYSLKPSNFQMSISEKRHDKVRGKAVKCKRASSPDNHGVQ
IKAEGLSEQCQAITLPKGDRKRNRLRPTGTATAKAKPAINMPWRVRCKATNRRAKIHENE
SDESATSGEHLHNDESEGAAGTRGSPENVGEHGSGIQNKDVADDLELSPHGETFPQGTSE
CSRSRERLDEAHETSYESANIASGKLEDPVDPVQAMLLHMIPQLDGKPSHSVDSLVKDDK
PEADANPSPKKKKKVSYKDVAGELLKDW
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagatggtggtggtagtagtattggcggagaagacataaagttc
agcgtaatggttagcctattccagtggatacagaagagcaaatcatcagctcagaagcgg
tccaagttccggaagtttctagacgccttctgcaggaagcctcaggacaatttcgctgct
atgcggctcattcttcctggtctcgaccgagagcgtggctcttatggactcaaagagcac
gtgcttgccacgtgcctcattgatgcccttgccatgtcccgtgactccgatgatgcccga
cggctcctcaactggcgtaaaggcggccccaaaactggctccaatgccggaaacttctct
cttgtcgctgccgaggtcctccaacgtagacagggaatggcctctgctgggctaacaatt
aaggaactaaatgaattccttgatcacttggcgtccagtgaaaacagagcagagaagact
tcaattctgtctgatctcatcagaaaaacaaatgcccaagaaatgaaatggattataatg
ataattctgaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattccat
cctgatgcagaggacttattcaatgtcacatgcgatttaaaactagtttgtgaaaagttg
agggacagaagtcaacggcataaacaccaggacattgaagttggaaaagcggtccgccct
cagctggctcttagggtcagtaatgcatctgctgcgtggaaaaagcttcatgggaaggaa
gtagttgttgagtgcaaatttgacggggatcgtatccagattcataaaaataattctgac
ctaaacttcttctcaagaaacttttttgatcatcaagagtatgctcatggaatgtcagat
gttattacacagaatattcttgttaacaagtgcatacttgatggtgaaatgctggtttgg
gatgcatcaatgaaccgctttgcagagtttggttccaatcaagaaatagcaaaggctgca
agagagggtcttgatagtgataggcagttgtgctacattgcattcgatattctttatgtt
ggggataccagtgttattcaccgaagcttgaaggaacgtcaagagattctccagaaagtc
gtgaagcccataaaaggccgtttagaaattttagtccctaatggcggtcttaatgctcat
cgtccttctggggagccatgttggtcgatcattgctcatagtgttgacgatgttgataaa
ttctttaaagaaactgttgagaacagagatgaaggaattgttttgaaagacctaacttca
aaatgggaacccagtgatcggagtggaaaatggctaaagttgaagcctgaatatgttcga
gctggctctgatttggatgttcttattattggaggctactatggttctgggcgccatgga
ggagaggtagctcaatttctggttggtcttgcagagcgtccagctccaaatacatatccc
cgaaggttcatttctttttgcagagtgggcactggagtttctgatgaggaacgtaatacc
atagtaactcgattaaagccctatttccggaagtatgagtacccgaagcaggcaccacca
acgttttatcaagtaacaaataatgcaaaagagcgaccagacgtgtgggttgaaagtcca
gagaaatccatcattgtttcgattacaagtgacattagaacaataagaactgaggtattt
gctgctccatacagcttgagatttccacgtattgatcgagtgagatatgaaaagccttgg
catgagtgtcttgatgtgcaatcatttgttgacctggtacattcgagcaatggtaccacg
cagagggaggcagattatggagttgggcaggatcatgaaccaaaggccattaggtcgtca
agaaaacgagggaaaaagaatgtttctgcagttccttctcattttgtacagactgacgtg
tctcacatcaagggtgaaacgtcagtgttctctaacatggtgttctattttgctaatgtg
ccttcatcacatacacttgattccatgcacaaaatggtggtcgagcatgggggttctttc
tccatgaatttgaataactcagttactcactgtatagcagctgaaaatagaggtatcaag
tttcaagctgcaaaacttcatggagatgttattcactgctcttggctctttgattgctgt
ctgcaaaagaggctccttcctttacagccaaagtattttcttttcctttctgattcaaca
aagagaaagttggaagcagaagtggatgaatattgtgattctttctactctgacctcagc
gtcaaagacattagaaagcttttgagcgacatagaacgctccgaagactccaaaactgtt
gagtactacaagaaaaagtactgtcccaaggataaatgggctcgatttcatggttgctgc
atttgctttttcattccagagcagtgtttgaaatattcagattgcaaggctttagtggaa
ctcgctacgagaaggatgaaagttgaaatttctgtgggtggtgggaaagttggtgacaat
ctttgtcatgttacccatgtggtggtcatgtctctaccagactttgatgtaaatttcagt
gaagttttaaatagtttctcagaggcagagaagcatgttttgtacaacacaaaactgcac
gttgtcagggcaagttggttggaggatttctttaaagaggaccggaagttacacgaggat
agttacagcctaaagcctagcaattttcaaatgtcaatctctgagaagagacatgataag
gtaagaggaaaagccgtaaagtgcaaaagagcatcttcccctgataatcacggagtacaa
atcaaagcagaaggactttcagaacagtgccaagccatcacgctacctaagggggataga
aagagaaatagattaagacctactggtactgctacagcaaaagcaaaaccagcaatcaac
atgccatggagagttaggtgcaaggccacaaatagacgtgctaagattcatgaaaatgaa
tctgatgaaagtgccacttcaggtgagcaccttcataatgatgagagtgaaggggctgct
gggactcgtggaagtcctgaaaatgttggagagcatggctcaggaattcagaataaggat
gttgcagatgatttggaattgtcaccacatggtgaaacatttccacaaggcacttctgaa
tgcagtaggagccgtgaaagattggacgaagctcacgaaacttcatatgaaagtgcaaat
attgccagtggtaagctggaagaccctgttgatccagtccaagctatgttattgcatatg
ataccccagctggatggtaagccaagccatagtgtggacagtcttgtaaaagacgacaaa
ccagaggcagatgctaatcctagtcctaaaaagaaaaagaaagttagctataaggacgta
gctggtgaattgctcaaagattggtga
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integrated database retrieval system
