Nicotiana sylvestris (wood tobacco): 104222170
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Entry
104222170 CDS
T05026
Name
(RefSeq) LOW QUALITY PROTEIN: putative uncharacterized protein At4g01020, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104222170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104222170
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104222170
Spliceosome [BR:
nsy03041
]
Complex C
Other components
Step II factors
104222170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
AAA_19
IBR
zf-C3HC4_2
HA2_N
Helicase_RecD
AAA_22
ResIII
Motif
Other DBs
NCBI-GeneID:
104222170
NCBI-ProteinID:
XP_009771664
UniProt:
A0A1U7WAI0
LinkDB
All DBs
Position
Unknown
AA seq
1385 aa
AA seq
DB search
VCLSLILCYIYIYILRCCKFWVTVLIGETGSGKGTQLVQFLADSGVTGNGSIVCTQPRKL
AANSLAQRVQQESEGCYDDTSIICYSSYSSGHKFDSKIVFMTDHCLLQHYMVDETLSKIS
CIVVDEAHERSCLNTDLLLALIKNLLHHRLDLRLVIMSATADADQLADYFFGCGTFHVAG
RTYPVDIKYVPCESTGCLGAGPISSYVYDVIKMMTEIHETEGEGTLLAFLTSQIEVEWAC
EKFQSSSAIGLPLHGKLSYEEQHRVFLSYPGKRXVIFSTNVAETSLTIPGVKYVVDSGMV
KERRFEPGTCMSILRICNVSQSSANQRAGRAGRTEPGRCYRLYSESDFEAMPCHQEPEIR
KVHLGVAVLRILALGIKNVQDFDFVDAPSAKAIEMATRNLVQLGAVRQKDDAYELTTDGR
KIVKLGIEPRLGKMILRCFSKHLSREGVVLAAVMANSSSMFCRIGSEGDNLKSDCLKVQF
CHPNSDLFTLLSVYREWEAVPRERKNGWCWDNSINAKSMRRCQETVQELEACLENELNII
IASYWLWDPQVHTEHDETLKSTILFSLAENVAKYSGYDQLGYEVALSGKYIQLHPSCSLL
NFDRRPTWAVFGEILAAANEYLVCVTVFEFSSLCTLSPSPLFNFLEMDAQKLEKKVLTGF
GSMLLKRFCGKSNSSVNNLVSRIRTKHLDERIGIQVNVDKNEVLLCASSSDMERVLGQVN
DALKYESKLLQNECLEKCLFNGGSAASASVALFGAGAIVKHLELKKRFLAADIFHSNTKA
VDDKELLMFLERNTSGDICALLKSSGIGHDNEENRWGRVTFLSPDATKQATLLDKVECGG
GFLKVVPSRSVFCNDQTQFSSVLRAKVYWPRRCSKGLAIVKCEPKDVAFIVNDFSGVMIG
ENFIRSKASNKYIDSIVISGSNSDLSEPEIFDVLSAATNMKILDFFLVRGDAVENPPIAA
CEEALRREISAFMPKRIPLVQSIRVQVFQPEPKDTYMRAAVLFDGSRHLEAAEALEQIDG
KVLSGCLPWQKIRCQQLFHTSVSCPAPVYHVIRNQLDSLLARLRGRKGVECNLERNENGS
YRVKISATGTKIVAELRRPLKQLMKGKIVDHVGISPTVVQLLFSREGTNIMKMVQRETGT
YILFDRHSLYVRIFGSSDMIGMAQQSFGNALLALHESKQLEVHVRGGLLPLGLMKRVVQR
CGPDLSGLKLKVPDAELSLNTRRHCISIRGTKEMKQKVEEIISEISQTSGFPNRRMDDEA
DCPICLCELEDAYRLEGFTHIFCRSCLLEXCESAIRSREGFPLCCVHKGCGARMLFADLR
SLLSSEKLEELFRASIGAFVAASGGHYRFCPXPDCPSVYRVAESGVVGAPFTCGACYVET
CVKSP
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
gtttgtttgagcttgattctttgttatatatatatatacatactgcgatgttgcaaattc
tgggtgaccgttttgattggcgagactggatcaggaaaaggtacacaactggttcaattc
ctagctgattctggagtgactggtaatggatctatagtttgtactcagccccggaagctt
gctgccaattctttggcacaaagggtgcaacaggaaagcgaagggtgttatgatgacacc
tcgatcatatgctattcttcatattcatctggtcataaatttgattcaaagattgtgttt
atgacagatcattgccttctacagcactatatggtcgatgagactttgtccaagatttca
tgtattgttgttgatgaggcacatgaaagaagctgcctaaacactgatctacttttagca
ttgataaagaatttgctccatcacagacttgatctgaggcttgttattatgtctgccaca
gctgatgcagaccagcttgctgattacttctttggctgtggaacgttccacgtggctggt
agaacttatccggttgatattaaatatgttccctgtgaatccactggatgtcttggtgct
ggcccaatctcctcttatgtttatgatgttattaagatgatgactgaaatccatgaaaca
gagggagagggaacactcctagccttcttgacttctcaaattgaagtcgaatgggcttgt
gagaagtttcaatcatcatcagccattggtttacctttacatggcaaactatcctatgaa
gaacagcatagagtttttctcagctatccggggaagagannggtaatattcagtacaaat
gttgctgagacatcattgacaattccaggggttaaatatgttgttgattctggcatggtc
aaagaaagaaggtttgaacctggcacttgcatgagtattctcaggatatgcaatgtcagc
cagagctctgctaatcaacgggctggccgtgctgggagaactgaaccaggaaggtgttat
agactttactcagaaagtgattttgaggctatgccttgtcatcaggaacctgaaattcgc
aaggttcatcttggtgttgcagtgttgaggattcttgctctgggcatcaagaacgtgcaa
gattttgattttgttgacgcacctagcgctaaagctattgagatggccaccagaaatctg
gttcagttaggagctgttaggcaaaaagatgatgcttatgaattaactacagacgggcga
aaaatagtcaagttgggtattgaacctcggctaggcaaaatgatcctgcgttgctttagt
aaacatttgagtagagaaggtgttgttcttgctgctgttatggctaattcgagcagtatg
ttttgtaggattggttctgaaggagacaatctaaaatctgattgcttgaaggtgcaattt
tgccatccaaatagtgatctattcactctactttctgtttacagagaatgggaggctgtg
cctagggaaaggaagaatggctggtgttgggataatagcatcaatgccaaatccatgagg
agatgccaggagactgtgcaagaactggaagcttgcctcgagaacgaacttaatattatt
attgcaagctactggctttgggatcctcaggtgcataccgagcatgatgaaactttgaaa
agtacaatacttttttcacttgcggagaatgttgctaagtattctggatatgatcagcta
ggttatgaggtagcactaagtgggaagtatatccaactacatccatcatgttcactgtta
aattttgatcgacgacctacctgggcagtttttggtgaaatccttgctgcagctaatgag
tatctggtctgtgttaccgtatttgagtttagttctctttgtactcttagtccttccccg
ttgtttaattttctggagatggatgcccaaaagctggaaaagaaggttttaacaggtttt
gggagcatgctattgaaaagattctgtggaaaatctaacagtagtgtcaataaccttgtt
tcacgcattagaactaaacatttggatgaaaggattggcattcaagttaatgttgataag
aatgaggttttgttatgtgcttcgtccagtgacatggagcgtgttttgggccaagtgaat
gatgcactaaagtatgaaagcaagttgttgcagaatgaatgcttggagaaatgcctattc
aatggtggatcagctgcttctgcctcagttgccctctttggagctggtgcaattgttaag
catttggagcttaagaagagattcttggctgctgacatatttcattcaaatacaaaagca
gttgatgataaggaactgctgatgtttttggagagaaacacatcgggtgatatttgtgca
ctgctcaagtcctcaggcattggccacgacaatgaggagaacagatggggcagggtaaca
tttctttctcctgatgctactaaacaagctacattgttggataaggtagaatgtggtggt
ggctttctaaaagttgttccttcgaggagtgtattctgtaatgaccaaacgcagttttcc
tctgttctcagagctaaagtttattggcctcgtagatgcagtaaaggtttagctattgta
aaatgtgaaccaaaagatgttgcttttatagtaaatgatttctctggtgtaatgataggt
gaaaactttatccgttcaaaggcaagcaataagtacattgacagcatagtaatttcaggc
agcaatagcgatctttctgaaccggagatatttgacgttttgagtgcagcaacgaacatg
aaaattctggatttcttcttggtgagaggagatgctgtggaaaatcctccaattgctgct
tgtgaagaagcacttagaagagaaatatccgccttcatgcctaaaagaatccctttagtc
cagtctattcgggttcaggtcttccaaccagaaccgaaggacacttacatgcgagcggct
gtcctgtttgatggaagtcggcatcttgaagcagctgaggctttggagcaaattgatggc
aaggttttgtctggatgtcttccctggcagaagataagatgtcagcaactgtttcacacc
tctgtttcctgtcctgcaccagtttatcatgttattaggaaccagctggattctttactt
gcacgtctccggggaagaaagggtgtggagtgcaatctggagagaaatgaaaatgggtct
tatagggttaaaatatctgctactggtacaaagattgtggcagaactgagaaggccattg
aagcaacttatgaaaggcaagattgtggatcatgtgggtatttctccaactgttgtccaa
cttctattttcaagagaagggactaatattatgaagatggttcagcgggagacagggacc
tatattctttttgacaggcatagcctttatgtgagaatctttggttcctcagacatgatt
ggtatggcgcagcagagtttcggtaacgcccttctggctttacatgaaagcaagcaactt
gaagtgcatgttcgtggaggacttttgcctcttggcctgatgaaaagagttgttcagagg
tgtggaccagatcttagtggtctcaaactaaaggtgcccgatgcagagctctctctgaac
actaggcgccattgcatctctattagaggtactaaagagatgaagcaaaaagttgaggag
ataatttctgaaatttctcaaacaagtgggtttccaaatcgaaggatggatgatgaggct
gactgtcctatttgcttgtgtgaactagaggatgcttatagacttgaaggttttacccac
atcttctgtcgatcatgcttgctggaatagtgcgagtctgcaatcagaagcagggaaggt
ttcccgctatgttgtgtgcataaaggttgtggagcacgtatgctgtttgctgatttgagg
tctctattgtcaagtgagaagttggaagaacttttcagggcttctataggggcttttgta
gcagcaagcgggggtcactaccggttttgcccctaacctgactgcccttcagtgtatcgt
gttgctgaatcaggagtggttggtgcgccctttacctgtggtgcatgttatgtggagacg
tgtgttaaatctccatga
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