Nicotiana sylvestris (wood tobacco): 104236359 Help Entry 104236359         CDS       T05026                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism nsy  Nicotiana sylvestris (wood tobacco) Pathway nsy03030   DNA replication nsy03410   Base excision repair nsy03420   Nucleotide excision repair nsy03430   Mismatch repair Brite KEGG Orthology (KO) [BR:nsy00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     104236359    03410 Base excision repair     104236359    03420 Nucleotide excision repair     104236359    03430 Mismatch repair     104236359  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:nsy03032]     104236359    03400 DNA repair and recombination proteins [BR:nsy03400]     104236359 Enzymes [BR:nsy01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      104236359     6.5.1.6  DNA ligase (ATP or NAD+)      104236359     6.5.1.7  DNA ligase (ATP, ADP or GTP)      104236359 DNA replication proteins [BR:nsy03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     104236359  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      104236359 DNA repair and recombination proteins [BR:nsy03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      104236359    NER (nucleotide excision repair)     Other NER factors      104236359    MMR (mismatch excision repair)     Other MMR factors      104236359 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  104236359 NCBI-ProteinID:  XP_009788569 UniProt:  A0A1U7XNQ1 LinkDB All DBs Position Unknown AA seq 775 aa AA seqDB search MLPLRSCCHHFAQPSLYNRLHFSLKPSSLFLLISPLNPLKTIRPLFLNPNSRTMSTRRSA FDVLMANSKKKTPTQDSSPKKRKTPEAETSNKTAILENHNQDSILKPNEDTHLVNESKSE EVLVKKQKMISPDESVTELKKKAANFDPRKAAYWRDGERVPFIFVVKAFDAISKESGRIV ITEIVTNMLRTVIETTPEDLLPVVYLSANKIAAAHDGLELGIGDASIIKALAEACGTKEA HIKKQYKELGDLGLVAKASRSSQPLMRKPEALTVAKVFDTFRIIAKESGKDSQEKKKNYI KSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLVALAQASVYSDKHSSPPAGVDSPLEEA AKIVKQVYSVIPVYEKVVPAILADGVWKLSETCSFSPGVPVGPMLAKPTKGVSEILDKFQ DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSATSFVLD CELVAYDREKQKILPFQILSTRARKNVVMNDIKVNVCIYAFDILYLNGQPLLQEQLNVRR EHLYKSFEEEPGYFQFATAVTSNDLEEITKFLEAAVNDSNEGLIIKTLSRDATYEPSKRS NNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTG FSEAMLEERSSSLRSKVIPKPKSYYRYAETINPDVWFEPTEVWEVKAADLTISPVHRAAQ GIVDRDKGISLRFPRLIRVREDKNPEQASSADMVADMFNAQKHNHKNDKDDNEED NT seq 2328 nt NT seq  +upstreamnt  +downstreamnt atgttgccgttgcgctcatgctgtcaccatttcgctcaaccttctctttacaaccgtctc catttctcccttaaaccctcttcactctttctccttatatccccccttaatccccttaaa accattagaccccttttcttaaaccctaattcaagaaccatgtcaactcgtcgctctgct ttcgatgtccttatggcaaattccaagaaaaaaaccccaacccaagattcctcacccaag aaacgcaaaaccccagaagctgaaacttccaataaaactgctattcttgaaaatcataat caagattcaattttgaagccaaatgaggacacccatttggttaatgagtcgaaaagtgaa gaggttctggtgaagaaacagaagatgataagtccagatgagagtgtgactgagctgaag aaaaaagctgccaactttgatccaagaaaggctgcatattggagggatggtgagagagtg ccgttcatttttgtagttaaggcgttcgacgcgatttcgaaggagtcaggaagaattgta attactgaaattgtgactaatatgttgaggactgtgattgagacgacgcccgaggatttg ttgcctgttgtgtacctttcggctaacaagattgcagctgcacatgatggtttggagctt ggtattggcgatgcttcgataatcaaggcacttgctgaagcttgtggcactaaagaagca catattaagaagcaatataaggagcttggagacttgggccttgttgcaaaagcaagccgt tcatcacagcctctgatgcgtaaaccagaagcattgactgttgccaaagtttttgacacg tttcgaattattgccaaggaatctgggaaggatagtcaggaaaagaaaaagaattacatt aaatcactacttgttgcagctactgattgtgaaccccaatatttgattcgtctcctccag acaaagctacgcattggtttggctgaacaaacactgttagtcgcacttgctcaagcttct gtgtactcggacaagcattcatcacctcctgcaggtgtagattctcctttggaagaggct gccaagattgtaaagcaagtgtactctgtaattccggtttatgaaaaagttgttcctgct attctagctgatggtgtttggaagctttcagaaacatgcagcttctcacctggtgttccg gttggacctatgctagctaagccaaccaaaggagtatctgaaattcttgataagtttcag gatatggagttcacatgtgaatacaagtatgacggtgaacgtgctcagatacattacttg gaagatggttctgttgagatatacagccgaaatgcagaaagaaatactggaaagtttcct gacgttgttgctgctatctcaagattgaaaaaatcttctgcaacatcatttgttcttgat tgtgaactggtcgcatatgaccgtgagaaacagaagatcctgccctttcagatcctcagt acgcgtgctcgtaagaatgttgtcatgaatgatatcaaggtcaacgtttgcatatatgct tttgatatcttgtatcttaatggacaacctcttcttcaagagcagcttaacgtgcgcaga gagcatctttacaagtcatttgaagaagaacccggatatttccaatttgctacagctgta acctcaaacgatcttgaggaaataacaaaatttcttgaagctgcagtgaatgacagtaat gagggattgattatcaagacgctaagtagagatgctacatatgagccttcaaagcggtca aataactggctaaaactgaagaaggactacatggaaagtattggtgactcactggatttg gtaccaattgctgcttttcatggtcgggggaaacgtactggtgtttacggagcctttctc ctagcttgttatgatagcaacaacgaggagttccagagcatctgtaaaattggaactgga ttttccgaagcaatgcttgaagaacgctcttccagccttcgttccaaagttattccaaaa ccaaagtcatattacaggtatgcggaaaccatcaatccagatgtatggtttgaacctact gaggtatgggaagtgaaagcagctgatcttaccatcagcccagtccaccgtgctgcgcaa ggtatcgtggatcgcgataagggaatttctttaagatttccacgtttgattcgtgtacga gaagacaagaatcctgagcaggcctcatcagcagacatggttgcggatatgtttaatgca cagaagcacaatcataaaaatgataaggatgataatgaagaagactaa

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