KEGG   Nicotiana sylvestris (wood tobacco): 104236554
Entry
104236554         CDS       T05026                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03082  ATP-dependent chromatin remodeling
nsy03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104236554
   03083 Polycomb repressive complex
    104236554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nsy03036]
    104236554
Enzymes [BR:nsy01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104236554
Chromosome and associated proteins [BR:nsy03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104236554
   HDAC complexes
    Sin3A-HDAC complex
     104236554
    BRAF-HDAC complex
     104236554
    REST complex
     104236554
    SHIP complex
     104236554
    MiDAC complex
     104236554
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104236554
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104236554
  Chromatin remodeling factors
   NuRD complex
    104236554
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 104236554
NCBI-ProteinID: XP_009788798
UniProt: A0A1U7XD47
LinkDB
Position
Unknown
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHNKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQHLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGIFTRLFKT
IIAKVVETYSPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFGPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERVDQHTQDKHIQRDDEYYEGD
HDNDNHMDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcggtccaaggacaaaatctcctacttctacgacggcgatgtcggaagcgtgtacttc
ggtccgaatcatccaatgaagccgcacagattgtgtatgactcatcatctggttctagct
tatggtcttcacaacaagatggaagtttataggcctcataaagcatatccagtggagcta
gcgcagtttcattcagctgattatgttgagttcttgaaccgaattacccctgatacccag
cacttgttccctagtgaaatggctagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgccaaatttatgctggtggaacaatagatgctgcacgcaggttg
aataatcagctttgtgacattgctataaattgggctggtggattgcatcatgctaagaaa
tgtgctgcttcaggattttgctatataaatgacctagttctgggaatattggagctactg
aagtatcatgcgagggtgctatatattgatattgatgtgcatcacggtgatggtgtagaa
gaggccttttatttcactgacagggttatgacagttagtttccacaagtatggagataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcctctcaaggatggaatagatgatggcatcttcactcgactcttcaaaaca
attattgcaaaggttgtggaaacatattcacctggtgcgatagttctgcaatgtggggca
gattcactagctggtgaccgtctgggctgcttcaacctctccattgatgggcatgctgaa
tgcgtaaggtttgtgaagaaatttaatttgccattgctggtaactggaggtgggggatac
acaaaagagaatgttgcccgatgttgggcactggaaactggagttcttttagacacagaa
cttcctaatgaaattccagataatgattacatcaaatattttggccctgattattcattg
aagcttcctggcgggcacatagagaacttgaatagcaaatcatacattggcaccataaag
atgcaagttatggaaaatcttcgttgcatccagcatgctcctggtgtacaaatgcaagaa
gtaccacccgacttctatattcctgattttgatgaagatgagcaaaatccagacgagcgt
gtggatcagcacacccaagataagcatattcagcgtgacgatgaatattatgagggcgac
catgacaatgataaccacatggatgatgcttaa

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