Nicotiana sylvestris (wood tobacco): 104246334
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Entry
104246334 CDS
T05026
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104246334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nsy03036
]
104246334
Chromosome and associated proteins [BR:
nsy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104246334
Chromatin remodeling factors
NuRD complex
104246334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Chromo
DUF1087
Helicase_C
ResIII
PHD
HDA2-3
CHDCT2
DEAD
C1_2
Myb_DNA-binding
PHD_4
zf-HC5HC2H
C1_1
VWA_N2
Motif
Other DBs
NCBI-GeneID:
104246334
NCBI-ProteinID:
XP_009800443
UniProt:
A0A1U7YBE1
LinkDB
All DBs
Position
Unknown
AA seq
1453 aa
AA seq
DB search
MLSKKMASLVERLRVRSDRRPVYNLDESDEEADQKPGKSGTKKQEYEKIVRSDAKDESCQ
ACGGDSNLLYCETCNYAYHPKCLVPPLKAPLPSSWWCPVCVSPLNDIDKILDCETRPTVA
DDNDASKLGSKQAFVKQYLVKWKGLSYLHCTWVPEKDFLKAYKAHPRLKTKVNNFHRQMS
SMTNSEEEYVAIRPEWTTVDRILARRGDGEEKEYLVKWKELPYDECYWEFESDISSFQHE
IERFHRVQSRYKKSSKQKGELKETTESNKKAKEFQQYESSPEFLSGGSLHPYQLEGLNFL
RFAWSKQTHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAP
QMNVVMYVGGAQARAIIRQYEFFFPKYLKKSKKKKSGQTVGESKQDRIKFDVLLTSYEMI
NMDSASLKPIKWECMIVDEGHRLKNKDSKLFSTLKQYSTRHRVLLTGTPLQNNLDELFML
MHFLDAGKFGSLEEFQQEFEDISQEEQVSRLHKMLAPHLLRRVKKDVMTELPPKKELILR
VELSSKQKEYYKAILTRNFQILTRKGGAQISLINVVMELRKLCCHPFMLEGVEPEDNNEF
TKQLLESSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCNYRKWQYERIDGKVG
GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAH
RLGQTNKVMIFRLITRGTIEERMMQMTKKKMILEHLVVGRLKAQNINQEELDDIIRYGSK
ELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEDAAVNDEEDDSFLKAFKVANFEYIE
EAEATAEEEAPPAPMENKATVNNSERATYWEELLRDKYEVHQVEEFNAMGKGKRSRKQMV
SVEDDDLAGLEDVSTDGEDDNYEAEADSSDGETASLGAPVVRKAHRKKARVDSAESHPLM
EGEGRSFRVLGFNQNQRAAFVQILMRFGVGEFDWAEFTPRLKQKTYEEIKDYGALFLSHI
AEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKAFSEKTGGPLFAEDILFRLPG
LKGGKLWKEEHDLLLLRAVLKHGYGRWQAIVDDKELRIQEIICKELNLPFINLPVPGASQ
PQVPPAPGASQAQVTVPGASQAAIGVNTANAGPAGAAGSQVKATGDGNAYGADLSHGTSD
PSNRPQPHQDPSSLYHFREMQRRQVEFIKKRVLLLEKGLNAEYQKEAFGDENSHELPNEE
MVCDTKAADEPNRNVDETNTELIDHFPILVAISPQGISQVACDRKPDRLGVAELYNKMCQ
VLSGDVQDSLNVSHPSMRKNILPLEAICQQMNQILSSSHQNTPNFKRELVQEYRDSEASK
SSIPVLSSQVDNRVSKSASNCTVASMAESNEHHNISPAEVPETRPSGLSTGEADIEMVDN
SDISATNIDRKEN
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgctgtctaagaaaatggctagcttggtggagaggcttcgtgtgcgatcggatcgcaga
cctgtttacaatttagatgagtctgatgaagaagctgatcagaagcctggaaagtctggg
actaagaagcaggaatatgagaaaattgttcgatctgatgcgaaagatgagtcttgtcaa
gcttgtggaggagatagtaaccttttgtactgcgaaacatgtaactacgcttaccatccc
aagtgtttagttccaccactaaaggctcctctgccaagcagctggtggtgccctgtatgt
gtgagtcccctgaatgatattgacaagatattggattgtgaaacgcgccctactgttgct
gatgataatgatgcttccaagcttgggtcgaagcaagcatttgttaaacagtaccttgtt
aagtggaaaggattgtcttatcttcactgcacatgggtgccagagaaagattttttaaaa
gcttacaaagcgcatccccgtttgaagactaaagtgaataacttccatcgccaaatgtca
tcaatgactaactctgaagaggaatacgtcgcaatccgtcctgagtggactacagttgat
cgaattctcgctcgcaggggagatggtgaagaaaaagagtatcttgtaaagtggaaggag
cttccatatgatgagtgctactgggaatttgaatcagacatttcctcttttcagcacgaa
attgaaagatttcatagagttcagtctagatataaaaaatcttcaaaacaaaagggtgag
cttaaagagacaacagaatctaacaagaaagccaaagaatttcaacagtatgaaagcagt
cctgaatttctttctggaggttcactgcatccatatcagcttgaagggctgaatttcttg
cgttttgcttggtccaaacagacacatgtcatactggctgatgaaatggggttaggcaaa
acaatacagagtattgcatttttagcctcccttttcaaagagaatgtttctccgcattta
gtagtagcgcctctttccacattgagaaattgggagcgtgagtttgccacttgggctcct
caaatgaatgtggttatgtatgtcgggggtgcacaagctcgtgctattattagacaatat
gaatttttcttcccgaaatatctcaagaagagcaagaaaaagaaatctggtcaaactgtt
ggtgaaagcaagcaagataggataaagtttgatgtcctcctgacttcatatgaaatgatc
aatatggatagtgcctctctgaagccaataaagtgggaatgcatgattgttgatgaaggt
catcgtctgaagaacaaggattccaagttattttcaactttgaagcagtactctactaga
catcgtgttcttttaactggaactccccttcagaacaatctggatgagcttttcatgctg
atgcacttccttgacgctggaaagtttggaagcttggaggaattccagcaggagtttgag
gacattagtcaggaggaacaggtttcaagacttcataaaatgctagcacctcatctcctc
agaagagtcaagaaagatgtcatgacagagcttcctcctaaaaaagaactcattttacgt
gtggaattgagtagcaaacagaaagaatattacaaagctattctgacccgtaacttccag
atactgactcgcaagggaggtgctcagatttcactcataaatgtggtgatggagctgcgc
aagctctgctgtcatccgtttatgttagaaggtgttgagccagaggataataatgagttt
accaaacagctgctggaatcttctggcaaattacaacttctggacaagatgatggttagg
cttaaagaacaagggcaccgagttcttatatattctcaatttcagcatatgcttgacttg
ctagaagactactgtaactataggaaatggcaatatgaacggattgatggaaaagttggt
ggagcagagagacaaatccgaattgatcgatttaatgctaagaattcatcaagattttgt
tttcttctttctactagggcagggggtttaggaataaaccttgcaactgctgacacagta
gttatttatgacagtgactggaatccccatgctgacctgcaagcaatggctagagctcat
cggcttggacaaacaaataaggtgatgatcttccgactcataacaagaggaaccattgaa
gaaagaatgatgcagatgactaagaagaaaatgattttagaacatcttgttgttggaagg
ctcaaagctcaaaacatcaatcaggaagaacttgatgacatcataaggtatgggtcaaaa
gagttatttgctgatgaaaatgacgaggctgggaaatctcggcaaattcattatgatgat
gctgcaatagatagattacttgatcgtgagcaagttggagatgaagatgctgcagtgaat
gatgaagaggacgattcatttctgaaggcttttaaggtagctaattttgagtacattgaa
gaagctgaagcaacagcagaagaggaagcaccaccagcccctatggagaataaagcaact
gtaaacaattctgagagagcaacttattgggaagaattgctacgagataaatatgaagtg
catcaagttgaagaattcaatgctatgggaaagggaaagaggagccgtaagcagatggtg
tctgttgaagatgatgatcttgctggtctggaagacgtgagcactgatggagaggatgac
aactatgaagctgaagctgattcgagtgatggtgagacagcttcactgggagcgccagtt
gtgagaaaggctcacagaaagaaagcccgcgtggattctgctgaatcgcaccctttgatg
gaaggagaaggaagatcatttagagtactaggcttcaatcaaaaccaaagggcagcattt
gttcaaattttgatgagatttggggttggtgagtttgactgggcagaattcactccacga
ttgaagcagaaaacttatgaagaaattaaagattatggagctctctttctgtcgcacata
gctgaagatatcactgactcgccaacattttcagatggggttccaaaagaaggacttaga
atacaagatgtgcttgttaggatagctgtcttgctgcttataagggacaaggtgaaggct
ttttcagaaaagacaggtggccctctttttgccgaggacattctgtttcggttgcctgga
ttgaaaggtggaaagctttggaaggaagagcatgatctgctgctgctacgagcagtgtta
aagcatggttatggaagatggcaggcaattgttgatgataaggagttgaggattcaagag
atcatctgtaaagagctcaatcttcccttcataaatttacccgttcccggagcttctcag
ccacaagttcctcctgctccaggagcttcccaagctcaagttactgttcctggagcttct
caagcagcaattggtgtaaatacagctaatgctgggcctgctggagctgctggaagtcag
gtgaaagctactggtgatgggaatgcctatggagctgacctttcacatggtacaagcgat
ccttcaaatagaccacaacctcaccaagatccgtcttcattatatcattttagagagatg
cagagaagacaagtggaattcataaagaaaagggtgctgcttcttgaaaagggccttaat
gctgaatatcagaaagaagcctttggtgatgaaaattctcatgaactgcctaatgaagag
atggtgtgtgataccaaggctgcggatgaaccaaatcgaaatgttgatgaaaccaatact
gaattgattgatcatttccccatacttgtagcaatttctccacagggaatatctcaagtt
gcttgtgatcgtaaaccagatcgtttaggtgttgcagagctttataacaagatgtgccag
gtactctccggagatgtccaagattcattaaatgtgagtcaccctagtatgagaaagaac
attcttccattggaagcgatttgtcaacagatgaaccaaattctttcttcatcacatcaa
aatactccgaatttcaagagggaactggttcaagaatatagggattctgaggctagtaaa
tccagtattccagtcctatcatctcaagtagataatagggtatccaagagtgctagcaat
tgtacagtagcaagcatggctgagagcaacgagcaccacaacatttctcctgcagaagtt
ccagagactagacctagtggtttatcaactggagaagctgatatagagatggtggataat
agtgacatttccgccaccaatattgacagaaaagaaaattag
DBGET
integrated database retrieval system
