Nicotiana tabacum (common tobacco): 107759140
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Entry
107759140 CDS
T04643
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107759140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107759140
03019 Messenger RNA biogenesis [BR:
nta03019
]
107759140
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107759140
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107759140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107759140
NCBI-ProteinID:
XP_016432499
UniProt:
A0A1S3WY15
LinkDB
All DBs
Position
Un
AA seq
986 aa
AA seq
DB search
MALAGGFASSKAIQNDAVVAAPPKPLPSPSIIERFRAALKEREEELRASSMPVVDDDDDV
IVLPPTMDEIVRLYELFLSDLTFNSKPVITDLTIIAGEQREHGQGIADAICSRILEVPVE
QKLPSLYLLDSIVKNIGRDYVRHFSAHLPEVFCEAYRQVHPSMHPAMRHLFGTWSTVFPA
PVLRKIETRLQFSQPGPQQSSGLTSSRASESPRPTHGIHVNPKYLEARRQLGHSTIDSVR
VENPAGHISSDLEAKQVLSTASKNARSSSPYRVGPARSLSPTLDEFAVDNSAIGLREGAS
PSHSALDYGLNRVRGRDDERNEWQRILPDDANQQPDIPVKYGLNKDYGLNRDFDLQGPRA
LIDAYGIDEREKLVNQRQRKMGNAAMNSLGERVAVKTWQNTEEEEFNWEDMSPTLADQSP
FNDLSTSVRHPQGIRTRPGLDSQHVVPLVSDPRRSWSNRGQYSSVHDSSLDDVHSSGRGA
RNKITGYCDETSLISGSPYLQKLPENVPLLPQRHLKVEGSGIVTGEPKHPLISNLVADGH
TWRPPYIPPKMNPTFESSVQDIRAVTGRAPIVPWPPTDVHNPQSLTSKPFVLPHQHIRSP
FEVKNGSNSVANHNLDKPVLPGQQIDNSKSNSYIKFPQFPSQHPASFSASLQNPEQVASA
ESQLLFSQRMHQTTVPSASLPASNHFLLPPIYGYNPQGPGSSVGTLLPLPVSGPQVSLPL
VNIPNTSSQFSSGALPPLPRGPLPMSSQFTPTSQNLGQVTPNPPAGGFSSLISSLMAQGL
ISLTNEAPPQDSVGLDFNPDLLKVRHDSAVTALYADLPRQCTTCGLRFKCQEAHSSHMDW
HVTKNRVSKNRKQKSSRKWFVSVNMWFSGTEALGSDAAPGFLPAEQVVEKKDDEELAVPA
DDEQNVCALCGEPFDDFYSDETEEWMYKGAVYMNAPSGSTAGMEKSQLGPIIHAKCRSES
SATPHEDSRRVDEGLEDGSQRKRMRS
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggctttagccggcggctttgcgagctctaaggcaatccaaaacgacgccgttgtggcg
gcgcctccaaaaccgttgccgtctccttctataatcgaacgatttagggcggctttaaag
gagagagaggaggaacttagggcttcttctatgccggtcgtcgacgacgatgatgatgtt
atcgtgttgcccccgaccatggacgagattgttaggctttacgagctctttttgtccgat
ttaactttcaattctaagcctgtcattactgacctcaccataattgccggcgaacagaga
gaacacggtcaaggcatcgctgacgccatttgttctcgcattctcgaggtcccagtagaa
cagaaactaccctcattataccttctggatagtattgtaaagaatattggcagggattat
gtcaggcatttctctgcccatttacctgaggttttctgtgaggcatacaggcaagtgcac
cctagcatgcatcctgcaatgcgccacctcttcgggacatggtcaactgtgttcccagca
cctgtcctccgcaaaattgagacccgcctccagttttcccagcccgggccccaacaatct
tctggcttgacttcatcaagagcatctgaatcaccgcgaccaactcatggcattcatgta
aatccaaaatatttggaagcgaggcgtcagcttgggcactccactattgattcagttaga
gttgaaaatcctgcaggccatatatcttcagatctagaagctaagcaagttttgtctaca
gcttcaaagaatgcaaggtcatcctctccttatagagtggggcccgcgaggtcattgtca
cccacccttgatgagtttgcagtggataattctgccataggactcagagaaggggcctca
ccatctcattctgcacttgattatgggcttaacagagtaagaggtagagatgatgagagg
aatgagtggcagagaattttgcctgatgatgccaatcagcaaccagacattcctgttaaa
tatggtctgaacaaggattatggtctgaacagggattttgatcttcaaggacctagagct
ttgattgatgcttatggaattgatgaaagggaaaaattagtcaatcagaggcaacgaaag
atggggaatgctgctatgaatagcttaggcgaaagggtagctgtaaagacgtggcaaaat
actgaagaggaagaattcaattgggaagatatgagtccaactttagcagatcagagtcct
tttaatgatttgtcaacatctgttcgtcatcctcagggtattaggacgagacctggctta
gattcacaacatgttgtgcctttagtgtctgatcctagaaggagctggtctaatcgagga
caatattcgtcagttcatgattcttccttggatgatgttcactcgtctggtcgaggggcg
agaaataaaattactggatattgcgatgagacatctctgatttcaggttcgccttatctt
caaaaacttccagaaaatgtgccactgttgcctcaaagacatttaaaggttgaaggaagt
ggaatagtgactggtgaaccaaagcatcctttgattagcaatttggttgccgatggacat
acttggaggccgccatatattccgccaaaaatgaatcctacttttgagtcttcagttcag
gatattcgggctgttactggacgggccccgattgtaccatggcctcccacagatgtgcat
aatccccaatctttgacttcaaaaccttttgttctgcctcatcaacatatcagaagtccc
tttgaagtaaagaatggtagcaattcagttgccaatcataatctggacaagccagttctt
cctgggcaacagattgataattcgaagagcaactcatatatcaagtttccgcaatttcct
agtcaacatcctgcatcattttctgcaagtcttcaaaaccctgaacaagtggcttcagca
gaatctcagctattgttttctcagcgtatgcatcagactacggttccaagtgcctcactt
ccagcctcgaaccattttctattaccgccaatttatggatacaatccacagggtcctggt
tcttctgtaggtactctgttgcccctgccagtttcaggtccgcaggtgtctctgccattg
gttaatatcccaaatacatcttcacaattctcctcaggggccttaccacctttgcccaga
ggcccacttccaatgtcatctcaattcacgccaacatcccaaaatctaggtcaggttact
cctaaccctccggcagggggcttttcaagcttgattagctcactcatggcccaaggtttg
atttcgttgacaaatgaagctcccccacaggattctgtgggccttgattttaatccggat
ctccttaaggttcgtcatgattctgcggtaactgctttatatgctgatcttccaagacag
tgcacaacttgtggcctacggtttaaatgccaagaggctcacagcagtcacatggattgg
catgtaactaagaaccgagtatcaaaaaatcgcaagcagaagtcttctcgtaagtggttt
gtgagtgtcaatatgtggtttagtggtacggaggctttgggatctgatgcagctcctgga
tttctacccgctgagcaagttgtggaaaagaaggatgatgaagaattggccgtgcctgct
gatgatgagcaaaatgtttgtgcactgtgtggagagccttttgatgatttttacagtgac
gagactgaagaatggatgtataagggggctgtctatatgaatgcaccaagtgggtcaact
gctggaatggaaaagtctcagttgggtccaattattcatgcaaaatgcaggtctgaatct
agtgcaactccacatgaggactccagaagagtggatgagggtctggaagatggaagtcag
aggaaacgaatgcggagttag
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