Nicotiana tabacum (common tobacco): 107788108
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Entry
107788108 CDS
T04643
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107788108
03015 mRNA surveillance pathway
107788108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107788108
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107788108
mRNA cycle factors
P-body specific factors
107788108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107788108
NCBI-ProteinID:
XP_016465252
UniProt:
A0A1S3ZLM1
LinkDB
All DBs
Position
Un
AA seq
469 aa
AA seq
DB search
MKNRRTKVVVRHLPPTLSQSTLLEQVDSRFAGRYNWFTFRPGKTSLKHQSYSRAYIDFRN
TEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDAREATILKDPEYLEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARRSISNGRS
TKRVGGTSSRTPSSAASKRGSEKRTSTTMYVLRDSSKAGNGKDKSYILVPKRDDQQLSDK
SRTSAPGSGIDLVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVASTLKNS
PSSSAPKQNQRQEASGKIIRSILLKDARQNQSASQSEHQIQDKDKRPPRPPSMQLFQKDT
SGANEDKAAGNDLHVVHVEKQERRSRNRDRPDRGVWAPLRRADSSQASNEQSSQVRDFVE
GNYKHGSRRGLRDADGPSVGDGKPVRRGGTSAYSSLEKQVWVQKSSSGS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtggttgtgcggcacttgccgccgacgctttctcagtct
acgcttctcgagcaggttgattctcgcttcgctggtcggtacaactggttcacttttcgc
cccggcaagaccagcctgaagcatcaaagctattcaagagcctatattgactttagaaat
acagaagatgttattgagttcgctgagttctttgatgggcacgtgtttgtgaatgagaaa
ggcactcagttcaaaacaattgtcgagtatgctccttcacagcgtgttccaaagcactgg
tccaagaaggatgcccgtgaagcgaccatactgaaagatcctgaatatctggagttcctt
gaatttcttgcaaagcccgttgagaatcttccaagtgctgagatacaattggagagaaaa
gaggctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
atacgtcagaaaagagctgcgaagagtggagctcggagatctatatctaatggaagatca
accaaaagggttggtggcacatcctcaagaactcctagctcagctgcatctaaacgaggc
tctgaaaagaggacttctacaaccatgtatgttctacgagacagttctaaggctggaaat
ggtaaggacaaatcatacattctagtgccaaaacgtgatgatcagcagctctctgacaag
tcgagaacctctgctcctggatctgggattgatttagtggaaggggaaattggtcgttct
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcattagctcaacagaatgtggcatctactctcaagaattca
cctagttcatctgctccaaaacagaaccagcgccaagaggcaagtggcaagatcatcaga
agtattcttctcaaggatgctcggcagaatcaatcagcatctcagtcagagcatcaaata
caggataaggacaagagacctcctcggccaccaagtatgcagttgtttcagaaggatact
agtggagctaatgaggataaggccgctggaaatgacttgcatgttgtccatgttgagaag
caagaaagacgttctaggaatagagataggcctgatcgtggtgtttgggctcctcttcgc
cgtgctgatagttcacaggccagtaatgaacaatcttcccaagtgcgagattttgttgaa
ggtaactataaacatggtagtcgtcgtggtttgagggatgcagatggaccttctgttggg
gacggaaaacctgtgagaaggggaggtacttctgcctacagttctcttgagaaacaagtg
tgggttcaaaagtcaagttctggttcttag
DBGET
integrated database retrieval system
