Nocardia tengchongensis: KHQ06_02615
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Entry
KHQ06_02615 CDS
T07484
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ntc
Nocardia tengchongensis
Pathway
ntc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ntc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KHQ06_02615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntc03400
]
KHQ06_02615
Enzymes [BR:
ntc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KHQ06_02615
DNA repair and recombination proteins [BR:
ntc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KHQ06_02615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QVI22064
LinkDB
All DBs
Position
complement(588582..590840)
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AA seq
752 aa
AA seq
DB search
MGSRRDFGGIEVGLTNLDKVLYPATGTTKGAVIDYFTAIAPALLPHIADRPVTRKRWPNG
VDEPSFFEKNLAEHAPKWLERRTVRHSDRPVTYPLIDSVAGMAWLGQQAALELHVPQWRF
DGAEVGDVTRLVFDLDPGPGAGLDQCAEVALILRDVVREVGLQAYPVTSGSKGIHIYVPL
DRRLGPNGASAVAKQVATNLQQLRPELVTAVMAKSARAGKVFLDWSQNNPAKTTIAPYSL
RGRAEPWVAAPRDWSEIEQPKRLRHLTFGEVLRRFEEQGDLLAGLDDPLPEPDRLDTYRS
LRDPGRTPEPVPPGRPDAGPGDRFVVQEHHARRLHWDVRLERDGVLASWAVPKGPPTDTG
ENRLAVHTEDHPIEYLTFHGTIPKGEYGGGEMTIWDSGTYETEKWRDDEVIVWLHGQRLT
GRYALIQTSGNQWLMHLMKDQTPPEGNGAQPVSVPRPPAPMPRGLEPMLATAGDVTTLDA
GQWAFETKWDGFRLIAEIEDGAVTLRSRAGHDVTGKYAGLAVLGAELSGHAAVLDGEAVV
FDEHGGANLGLLRADSGRAVFLAFDLLYLDGTSLVRKRYDDRRRVLEALAGQARSLIVPP
QLRGSGADALRYSQEHGMEGVVAKRRDSVYLPGRRGQSWIKTRNWRTLSVVVGGYRRSAA
RQFASLLVGVRHQGELYYLGRVGTGFSEQEMSDLADRLHRLERKTSPFGNDLTADERRDA
VWVTPKLTGTVRFQNWTETGRLWHPAWIPGSD
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggggtcccgccgggatttcgggggcatcgaggttgggctgaccaacctcgacaaggtg
ctgtacccggccaccgggaccaccaagggtgcggtcatcgactatttcacggccatcgcc
ccggctctgctgccgcatattgcggaccgcccggtgacccgtaagcggtggccgaacggg
gtggacgagccgtcgttcttcgagaagaacctggccgagcacgcgccgaagtggttggaa
cggcgcaccgttcgccattccgatcggccggtcacctatccgctcatcgactcggtggcc
ggcatggcctggctcgggcagcaggccgccctggaattgcatgtgccgcaatggcgtttc
gacggcgccgaggtcggtgacgtcacccgcctggtgttcgatctggatcccgggccgggc
gcggggctcgaccaatgcgccgaggtcgctttgatcctgcgcgatgtggtgcgtgaggtg
ggtttgcaggcgtacccggttaccagcggctccaagggaattcacatctatgtgccgctg
gaccgcaggctcggcccgaacggggcgtcggcggtcgccaaacaggtcgccaccaatctg
cagcagctgcggccggagctggtgacggccgtcatggccaagtctgcgcgggcgggcaag
gtgttcctggactggagccagaacaatcccgccaagaccaccatcgcgccgtattcgctg
cgcggccgcgccgagccgtgggtggccgcgccgcgcgactggtcggagatcgaacagccg
aagcggctgcggcacttgaccttcggtgaagtactacgtcgattcgaggagcagggcgac
ctgctggcgggattggacgacccgctgccggaaccggatcggctcgacacctaccggtcc
ctgcgcgatcccggccgcacccccgaaccggtgccgcccggccggcccgacgccgggccg
ggggatcgattcgtggtgcaggagcatcacgcccgccggctgcactgggatgtccggctg
gaacgcgacggcgtcctcgcgtcctgggcggtccccaagggcccgcccaccgacaccggc
gagaaccggctggccgtgcacaccgaggaccatccgatcgagtacctcaccttccacggg
accatccccaagggtgagtacggcggcggcgagatgaccatctgggattccggcacctac
gagaccgagaagtggcgggacgacgaggtcatcgtctggttgcacgggcagcgcctgacc
gggcggtacgcgctgatccagaccagcggcaatcagtggctcatgcatctgatgaaggat
cagacgccgccggaaggcaatggggcgcaacctgtctcggtgccgcggccgcccgcgccg
atgccgcgcgggctcgagccgatgctggccacggccggtgacgtgacgaccctggacgcc
gggcagtgggcgttcgagaccaaatgggacggcttccggttgatcgccgagatcgaggac
ggcgcggtgaccttgcgcagccgcgccggtcacgatgtcaccgggaagtatgcgggcctg
gcggtgctgggtgcggaactgtccggccatgccgccgtgctggacggcgaggcggtggtc
ttcgacgagcacggcggcgcgaatctcggcctgctgcgcgccgattcgggtcgcgccgtc
ttcctggccttcgacctgctgtacctggacggcacctcgctggtccgcaaacgctacgac
gatcggcggcgcgtcctggaagctcttgccgggcaggcacgttcgctgatcgtgccgccg
cagctgcggggttcgggcgcggatgcgctgcgctacagccaggagcacggcatggagggg
gtggtcgccaaacgccgcgactcggtctacctgcccggccgccgcggccagtcctggatc
aagacccgcaactggcggacgctgtcggtggtggtcggcggctatcggcgttcggcggca
cggcaattcgcgtccctgctggtcggcgtccggcatcagggcgagctgtactacctcggc
cgggtcggcaccggtttcagcgagcaggagatgagcgatctcgccgaccgcctgcaccgg
ctggaacgcaagaccagcccgttcggcaacgacctcaccgccgacgaacgccgtgacgcc
gtgtgggtgacgccgaagctcaccggcacggtccgcttccagaactggaccgagaccgga
cgcctgtggcatccggcctggatccccggctccgactaa
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